Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

  • 3 649 unique TE insertions, which amount to a total of 6 655 occurrences among all samples.
  • With any insertion appearing on 1.8 ± 0.38 samples (median of 2 occurrences/insertion).
  • The average insertion count per case is 3 327.5 ± 33.2.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

  • 2 623 TE insertions.
  • A total of 4 984 calls across cases.
  • A mean prevalence of 1.9 ± 0.3.
  • The median prevalence is 2.
  • Each sample carries an average of 2 492 ± 15.6 TE insertions.

1.2 Genotyping

  • 243 unique insertions that passed the stringent filtering. (9.3% of the total unique insertions), had at least one occurrence genotyped as 0/0.

  • These amount to 302 total count (6.1% of filter-passing occurrences).

  • 155 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 214 insertion counts.

  • Of these fully wrong calls, 96 were only found on a single patient each (61.9% of the 155).

  • The strict criteria missed calls for 91 unique insertions (3.5%).

  • These mean a total of 91 occurrences, out of 4 984 calls that passed the stringent filter.

  • 91 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion

Unique INS with false positives (%)

Total false positives (%)

Unique INS (total) with all false positives

Unique INS with false negatives (%)

Total false negatives (Total positives)

Unique INS with more false negatives than positives

Strict

243
( 9.3)

302
(6.1)

155
(214)

91
(3.5)

91
(4 984)

91

Lax

612
(16.8)

771
(11.6)

501
(660)

0
(0.0)

0
(6 655)

0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

862 TE insertions were found on all cases in homozygosis.

Click to show table with 862 rows.

Position

Length

Type

AF

chr1:710 578

318

SINE (AluYa5)

1

chr1:1 993 703

146

SINE (FLAM_C)

1

chr1:7 953 092

96

Retroposon (SVA_F)

1

chr1:8 501 387

48

Retroposon (SVA_F)

1

chr1:9 170 364

317

SINE (AluY)

1

chr1:16 424 203

134

SINE (AluYk2)

1

chr1:21 166 094

316

SINE (AluYa5)

1

chr1:26 818 635

97

Retroposon (SVA_F)

1

chr1:28 410 097

124

SINE (AluSc8)

1

chr1:29 873 199

389

LINE (L1MD)

1

chr1:33 052 506

100

Retroposon (SVA_F)

1

chr1:38 485 066

75

SINE (FRAM)

1

chr1:45 330 021

326

SINE (AluYb8)

1

chr1:51 711 458

355

Retroposon (SVA_A)

1

chr1:52 869 965

98

Retroposon (SVA_F)

1

chr1:57 606 184

211

SINE (AluYk2)

1

chr1:63 473 989

117

Retroposon (SVA_F)

1

chr1:64 201 451

47

Retroposon (SVA_F)

1

chr1:64 492 377

346

SINE (AluY)

1

chr1:69 465 246

36

LINE (L1P3)

1

chr1:74 989 508

40

LINE (L1P1)

1

chr1:79 116 389

307

SINE (AluYb9)

1

chr1:80 387 550

320

SINE (AluYa5)

1

chr1:90 891 781

48

Retroposon (SVA_F)

1

chr1:92 701 961

321

SINE (AluYa5)

1

chr1:93 032 654

331

SINE (AluYa5)

1

chr1:94 877 128

299

SINE (AluYa5)

1

chr1:98 512 487

100

Retroposon (SVA_F)

1

chr1:100 528 653

325

SINE (AluYb9)

1

chr1:102 047 084

66

LTR (MER50-int)

1

chr1:103 272 218

97

LTR (HERVL-int)

1

chr1:105 788 296

192

SINE (AluYk2)

1

chr1:108 675 979

159

Retroposon (SVA_A)

1

chr1:112 774 364

177

Retroposon (SVA_F)

1

chr1:112 898 635

48

Retroposon (SVA_F)

1

chr1:117 430 034

174

Retroposon (SVA_F)

1

chr1:120 402 187

30

SINE (Alu)

1

chr1:125 013 224

222

LINE (L1PA3)

1

chr1:147 653 127

306

SINE (AluY)

1

chr1:147 949 446

117

Retroposon (SVA_F)

1

chr1:151 769 292

91

Retroposon (SVA_C)

1

chr1:159 449 991

90

Retroposon (SVA_C)

1

chr1:162 791 517

317

SINE (AluYa5)

1

chr1:163 344 640

327

SINE (AluYa5)

1

chr1:169 993 600

163

SINE (AluSz)

1

chr1:172 571 921

386

Retroposon (SVA_E)

1

chr1:176 396 707

126

Retroposon (SVA_F)

1

chr1:187 615 765

36

Retroposon (SVA_A)

1

chr1:191 119 508

135

SINE (AluSx)

1

chr1:196 184 400

324

SINE (AluYb8)

1

chr1:196 792 226

324

SINE (AluYb8)

1

chr1:196 811 780

153

SINE (AluYa5)

1

chr1:204 010 622

87

LTR (MSTA)

1

chr1:204 269 326

317

SINE (AluYg6)

1

chr1:211 460 647

419

Retroposon (SVA_F)

1

chr1:211 460 849

224

Retroposon (SVA_E)

1

chr1:217 828 482

324

SINE (AluYa5)

1

chr1:219 010 830

100

LINE (L1MCa)

1

chr1:220 466 557

98

Retroposon (SVA_F)

1

chr1:222 697 340

328

SINE (AluYb8)

1

chr1:226 114 913

47

Retroposon (SVA_F)

1

chr1:235 635 571

168

LTR (MSTB)

1

chr1:236 387 105

275

Retroposon (SVA_A)

1

chr1:237 286 555

204

LINE (L1PB)

1

chr1:244 941 424

133

SINE (AluSp)

1

chr1:245 826 009

323

SINE (AluYa5)

1

chr1:246 710 423

53

LTR (MSTB)

1

chr1:248 911 737

126

Retroposon (SVA_F)

1

chr2:1 467 941

331

SINE (AluY)

1

chr2:2 295 544

171

LTR (HERVIP10FH-int)

1

chr2:11 213 564

312

SINE (AluYa5)

1

chr2:11 286 233

325

SINE (AluYa5)

1

chr2:15 023 628

328

SINE (AluYb9)

1

chr2:21 573 937

297

SINE (AluYd8)

1

chr2:27 539 841

492

Retroposon (SVA_F)

1

chr2:31 336 819

318

SINE (AluYa5)

1

chr2:31 727 126

318

SINE (AluYa5)

1

chr2:36 777 087

305

SINE (AluY)

1

chr2:39 079 152

61

LINE (L1M5)

1

chr2:43 183 576

63

SINE (AluSq2)

1

chr2:44 588 252

125

Retroposon (SVA_F)

1

chr2:44 598 695

317

SINE (AluYa5)

1

chr2:47 092 140

329

SINE (AluY)

1

chr2:49 506 341

322

SINE (AluYb8)

1

chr2:50 375 489

328

SINE (AluY)

1

chr2:54 446 445

319

SINE (AluY)

1

chr2:54 889 449

313

SINE (AluYe5)

1

chr2:59 647 122

242

SINE (AluYb8)

1

chr2:60 418 626

63

LTR (HERVH-int)

1

chr2:63 552 086

328

SINE (AluY)

1

chr2:64 512 271

225

Retroposon (SVA_F)

1

chr2:73 898 351

318

SINE (AluYa5)

1

chr2:74 776 087

348

SINE (AluYa5)

1

chr2:75 160 773

315

SINE (AluY)

1

chr2:78 738 283

314

SINE (AluYa5)

1

chr2:81 359 182

87

LINE (L1PREC2)

1

chr2:82 938 173

40

LTR (LTR12C)

1

chr2:84 501 625

313

SINE (AluYg6)

1

chr2:87 180 576

492

LINE (L1HS)

1

chr2:113 348 853

318

SINE (AluYa5)

1

chr2:118 042 423

74

LINE (L1P5)

1

chr2:119 660 918

113

LINE (L1MC4a)

1

chr2:122 573 068

317

SINE (AluYa5)

1

chr2:127 881 317

322

SINE (AluY)

1

chr2:127 981 351

121

LTR (LTR21B)

1

chr2:139 757 713

44

LINE (L1M1)

1

chr2:144 589 184

324

SINE (AluYb8)

1

chr2:151 875 949

48

Retroposon (SVA_F)

1

chr2:152 391 750

325

SINE (AluYg6)

1

chr2:156 369 097

47

Retroposon (SVA_F)

1

chr2:157 653 842

324

SINE (AluYb8)

1

chr2:159 302 486

324

SINE (AluYa5)

1

chr2:161 095 804

298

SINE (AluSx)

1

chr2:168 287 804

284

SINE (AluYa5)

1

chr2:171 866 626

421

Retroposon (SVA_F)

1

chr2:172 657 428

146

SINE (AluYa5)

1

chr2:177 453 984

332

SINE (AluYb8)

1

chr2:177 486 725

339

SINE (AluYb8)

1

chr2:184 896 828

322

SINE (AluYa5)

1

chr2:188 711 105

90

LTR (MER11B)

1

chr2:189 094 694

310

SINE (AluYa5)

1

chr2:191 398 198

300

Retroposon (SVA_E)

1

chr2:191 742 647

48

Retroposon (SVA_F)

1

chr2:197 922 671

126

Retroposon (SVA_F)

1

chr2:200 773 343

968

LINE (L1HS)

1

chr2:202 534 993

49

Retroposon (SVA_F)

1

chr2:207 112 163

322

SINE (AluYb8)

1

chr2:207 607 676

315

SINE (AluY)

1

chr2:214 336 906

323

SINE (AluYb8)

1

chr2:221 579 721

36

SINE (AluSg4)

1

chr2:229 743 294

125

Retroposon (SVA_F)

1

chr2:232 246 907

127

LINE (L1MD3)

1

chr2:233 724 125

50

Retroposon (SVA_F)

1

chr3:4 163 465

316

SINE (AluYa5)

1

chr3:5 311 642

47

LTR (LTR33A_v)

1

chr3:10 070 475

212

Retroposon (SVA_F)

1

chr3:10 241 289

146

SINE (AluSx)

1

chr3:12 095 544

323

SINE (AluY)

1

chr3:18 993 945

320

SINE (AluYb9)

1

chr3:28 798 671

330

SINE (AluY)

1

chr3:32 002 688

94

LTR (LTR65)

1

chr3:34 737 405

42

LINE (L1P4)

1

chr3:35 469 102

65

LTR (LTR12_v)

1

chr3:38 358 205

289

SINE (AluYb8)

1

chr3:46 494 947

323

Retroposon (SVA_E)

1

chr3:48 483 720

48

Retroposon (SVA_F)

1

chr3:50 025 589

268

SINE (AluYa5)

1

chr3:50 084 780

77

Retroposon (SVA_F)

1

chr3:50 841 727

344

SINE (AluYb8)

1

chr3:61 671 974

39

Retroposon (SVA_A)

1

chr3:75 289 657

224

Retroposon (SVA_F)

1

chr3:78 583 006

39

Retroposon (SVA_E)

1

chr3:78 583 231

275

Retroposon (SVA_E)

1

chr3:78 583 374

49

Retroposon (SVA_F)

1

chr3:79 502 727

40

LTR (LTR12C)

1

chr3:79 619 091

52

LTR (HERVH-int)

1

chr3:80 248 694

45

LINE (L1PREC2)

1

chr3:83 254 913

137

SINE (AluY)

1

chr3:83 707 508

254

LINE (L1PA8A)

1

chr3:91 345 077

143

LTR (MLT1D)

1

chr3:91 361 104

243

LINE (L1MEg)

1

chr3:95 745 274

48

Retroposon (SVA_B)

1

chr3:100 458 406

311

SINE (AluYa5)

1

chr3:101 680 712

65

SINE (AluJb)

1

chr3:106 508 513

27

DNA (HSMAR2)

1

chr3:107 335 062

35

LINE (L1HS)

1

chr3:108 026 326

116

Retroposon (SVA_A)

1

chr3:110 694 546

281

SINE (AluSx)

1

chr3:111 444 270

32

LINE (L1P3)

1

chr3:111 507 514

335

SINE (AluYb9)

1

chr3:112 205 623

49

LINE (L1P3)

1

chr3:117 050 498

39

Retroposon (SVA_D)

1

chr3:123 407 764

310

SINE (AluYa5)

1

chr3:124 687 657

316

SINE (AluYa5)

1

chr3:124 922 699

134

SINE (AluJr4)

1

chr3:128 676 362

314

SINE (AluYe5)

1

chr3:129 339 096

48

Retroposon (SVA_F)

1

chr3:130 219 573

317

SINE (AluYe5)

1

chr3:134 199 945

38

LTR (LTR12_v)

1

chr3:136 893 195

105

LINE (L1P5)

1

chr3:141 159 482

50

LINE (L1PA12)

1

chr3:143 086 312

401

Retroposon (SVA_E)

1

chr3:145 526 548

322

SINE (AluY)

1

chr3:151 664 877

77

LTR (HERV9N-int)

1

chr3:157 848 540

37

SINE (Alu)

1

chr3:174 211 587

119

LTR (LTR12C)

1

chr3:174 211 749

119

LTR (LTR12C)

1

chr3:176 373 528

153

LINE (L1HS)

1

chr3:176 425 229

311

SINE (AluYa5)

1

chr3:182 153 132

129

LINE (L1P3)

1

chr3:189 398 051

326

SINE (AluYa5)

1

chr3:197 823 074

32

SINE (Alu)

1

chr3:197 847 677

57

DNA (MADE1)

1

chr4:2 570 071

317

SINE (AluYa5)

1

chr4:4 005 086

80

LTR (HERVH-int)

1

chr4:4 349 007

65

LTR (LTR12)

1

chr4:9 449 339

137

LINE (L1M3)

1

chr4:12 237 653

133

SINE (AluYb8)

1

chr4:13 761 218

146

Retroposon (SVA_F)

1

chr4:15 615 472

237

LTR (LTR12C)

1

chr4:36 323 570

314

SINE (AluYb8)

1

chr4:39 408 924

322

SINE (AluYb8)

1

chr4:42 086 022

315

SINE (AluYa5)

1

chr4:43 846 666

40

LTR (LTR12E)

1

chr4:44 963 877

36

LTR (LTR3B_v)

1

chr4:46 378 044

302

Retroposon (SVA_F)

1

chr4:46 782 419

40

LTR (LTR12E)

1

chr4:48 292 719

45

Retroposon (SVA_F)

1

chr4:52 081 945

147

LINE (L3)

1

chr4:52 465 601

48

Retroposon (SVA_F)

1

chr4:53 237 856

44

Retroposon (SVA_F)

1

chr4:54 325 449

147

Retroposon (SVA_F)

1

chr4:54 993 968

159

LTR (LTR12C)

1

chr4:58 110 152

101

SINE (AluYa5)

1

chr4:63 062 067

184

LTR (LTR12E)

1

chr4:63 697 451

308

SINE (AluY)

1

chr4:66 240 879

318

SINE (AluYa5)

1

chr4:67 098 159

307

SINE (AluY)

1

chr4:69 114 971

40

LTR (LTR12C)

1

chr4:69 762 349

175

Retroposon (SVA_F)

1

chr4:72 104 993

318

SINE (AluYa5)

1

chr4:78 238 350

318

SINE (AluYa5)

1

chr4:81 708 982

318

SINE (AluYa5)

1

chr4:83 182 608

621

Retroposon (SVA_F)

1

chr4:83 185 778

270

Retroposon (SVA_F)

1

chr4:83 186 020

48

Retroposon (SVA_F)

1

chr4:85 549 216

314

SINE (AluY)

1

chr4:106 399 078

64

LINE (L1M4c)

1

chr4:108 077 471

39

Retroposon (SVA_E)

1

chr4:108 659 089

30

SINE (Alu)

1

chr4:110 266 952

136

SINE (AluSq)

1

chr4:110 349 998

31

LINE (L1P4)

1

chr4:115 925 505

45

LINE (L1M2)

1

chr4:134 214 179

412

LTR (HERVL40-int)

1

chr4:138 304 044

331

SINE (AluYi6_4d)

1

chr4:140 017 765

151

SINE (AluYa5)

1

chr4:147 132 785

324

SINE (AluY)

1

chr4:150 660 232

98

Retroposon (SVA_F)

1

chr4:150 953 967

79

Retroposon (SVA_A)

1

chr4:151 214 794

126

Retroposon (SVA_F)

1

chr4:151 362 412

82

SINE (AluY)

1

chr4:157 637 145

140

Retroposon (SVA_A)

1

chr4:159 524 188

126

Retroposon (SVA_F)

1

chr4:163 836 593

223

SINE (AluYd8)

1

chr4:165 269 620

326

SINE (AluYa5)

1

chr4:173 123 062

319

SINE (AluY)

1

chr4:173 228 288

316

SINE (AluY)

1

chr4:174 613 139

327

SINE (AluYe5)

1

chr4:175 181 016

62

LINE (L1PREC2)

1

chr4:179 335 799

315

SINE (AluYi6)

1

chr4:185 056 645

309

SINE (AluYa5)

1

chr4:185 440 757

304

SINE (AluYa5)

1

chr4:186 491 744

54

SINE (AluJb)

1

chr4:189 404 990

71

LTR (MST-int)

1

chr5:1 812 525

312

SINE (AluYa5)

1

chr5:12 319 688

29

LINE (L1PA14)

1

chr5:18 673 483

62

LTR (HERVH-int)

1

chr5:18 673 574

64

LTR (HERVH-int)

1

chr5:20 471 978

280

LINE (L2a)

1

chr5:27 571 886

122

SINE (AluJb)

1

chr5:28 929 589

73

Retroposon (SVA_F)

1

chr5:32 762 455

329

SINE (AluYb8)

1

chr5:40 181 546

307

SINE (AluYa5)

1

chr5:54 087 760

65

SINE (AluYk2)

1

chr5:55 433 459

340

SINE (AluYb8)

1

chr5:55 569 961

320

SINE (AluY)

1

chr5:65 940 643

49

Retroposon (SVA_F)

1

chr5:69 515 538

97

Retroposon (SVA_F)

1

chr5:76 974 446

295

SINE (AluYd8)

1

chr5:77 395 389

313

SINE (AluY)

1

chr5:101 161 653

135

SINE (AluY)

1

chr5:104 113 189

49

SINE (Alu)

1

chr5:108 690 879

311

SINE (AluYa5)

1

chr5:111 450 624

186

SINE (AluYc)

1

chr5:115 404 024

289

SINE (AluYe5)

1

chr5:117 973 461

178

LTR (MST-int)

1

chr5:135 688 029

36

LINE (L1MB3)

1

chr5:137 538 121

127

Retroposon (SVA_F)

1

chr5:137 538 132

153

Retroposon (SVA_F)

1

chr5:140 215 541

327

SINE (AluYb8)

1

chr5:151 982 651

48

LINE (L1PBa)

1

chr5:154 657 244

316

SINE (AluYb8)

1

chr5:155 494 371

117

LINE (L1HS)

1

chr5:159 695 129

316

SINE (AluY)

1

chr5:161 104 485

329

SINE (AluYb8)

1

chr5:170 774 320

310

SINE (AluYa5)

1

chr5:176 306 174

50

Retroposon (SVA_F)

1

chr5:178 458 165

63

LINE (L1MC5)

1

chr6:6 034 535

319

SINE (AluYa5)

1

chr6:6 436 492

30

LTR (LTR9D)

1

chr6:7 441 878

81

LTR (LTR12D)

1

chr6:11 896 739

37

LINE (L1MC)

1

chr6:19 940 521

419

Retroposon (SVA_F)

1

chr6:21 353 449

62

SINE (AluYb8)

1

chr6:23 978 113

322

SINE (AluY)

1

chr6:26 753 983

335

SINE (AluY)

1

chr6:31 853 825

177

Retroposon (SVA_F)

1

chr6:32 501 766

325

SINE (AluY)

1

chr6:32 502 113

206

SINE (AluYc)

1

chr6:32 506 834

120

SINE (AluY)

1

chr6:32 547 334

87

LTR (LTR12C)

1

chr6:32 626 708

128

LINE (L1MEc)

1

chr6:32 720 800

317

SINE (AluYe5)

1

chr6:32 805 657

315

SINE (AluYa5)

1

chr6:34 398 183

177

Retroposon (SVA_A)

1

chr6:36 363 389

101

LTR (LTR12C)

1

chr6:38 964 348

345

Retroposon (SVA_E)

1

chr6:40 202 539

323

SINE (AluY)

1

chr6:43 927 736

317

SINE (AluY)

1

chr6:44 319 523

608

LINE (L2)

1

chr6:48 447 053

44

SINE (AluSc)

1

chr6:48 847 448

34

LINE (L1PB)

1

chr6:49 487 167

101

LINE (L1MC5)

1

chr6:52 969 272

72

SINE (AluSq2)

1

chr6:53 783 945

313

SINE (AluYa5)

1

chr6:57 311 175

36

Retroposon (SVA_A)

1

chr6:62 587 036

43

LTR (HERVH-int)

1

chr6:63 052 338

84

LINE (L1PREC2)

1

chr6:64 312 982

307

LINE (L1P3)

1

chr6:66 605 904

47

LTR (HERVL-int)

1

chr6:67 072 268

200

LINE (L1M4)

1

chr6:67 792 533

318

SINE (AluYa5)

1

chr6:73 601 480

273

Retroposon (SVA_F)

1

chr6:77 679 471

37

DNA (Tigger3c)

1

chr6:82 792 007

51

LINE (L1M1)

1

chr6:96 497 728

68

LINE (L1P3)

1

chr6:96 639 702

98

LINE (L1P1)

1

chr6:97 803 451

305

SINE (AluYa5)

1

chr6:103 902 688

324

SINE (AluY)

1

chr6:107 803 218

36

Retroposon (SVA_D)

1

chr6:114 768 707

105

SINE (AluSc)

1

chr6:120 247 099

319

SINE (AluY)

1

chr6:121 840 523

103

LINE (L2a)

1

chr6:141 014 727

131

LTR (LTR12)

1

chr6:146 455 303

60

LTR (HERVH-int)

1

chr6:146 455 384

61

LTR (HERVH-int)

1

chr6:148 178 700

126

Retroposon (SVA_F)

1

chr6:158 349 074

263

Retroposon (SVA_A)

1

chr6:158 783 393

325

SINE (AluY)

1

chr6:161 283 169

134

SINE (AluSz)

1

chr6:166 711 308

318

SINE (AluYb9)

1

chr6:170 185 527

331

SINE (AluY)

1

chr7:902 456

174

SINE (AluSx)

1

chr7:2 268 713

128

Retroposon (SVA_F)

1

chr7:6 904 663

59

LTR (HERVH-int)

1

chr7:22 813 858

315

SINE (AluYa5)

1

chr7:23 851 398

60

LTR (MSTA)

1

chr7:26 148 327

93

Retroposon (SVA_C)

1

chr7:37 797 033

310

SINE (AluYe5)

1

chr7:51 899 407

47

LTR (MLT1A0)

1

chr7:52 703 768

336

LINE (L1MCa)

1

chr7:52 721 764

354

LINE (L1HS)

1

chr7:56 177 209

323

SINE (AluYb8)

1

chr7:56 211 149

300

SINE (AluYa5)

1

chr7:64 809 491

125

Retroposon (SVA_F)

1

chr7:67 145 044

319

SINE (AluYb8)

1

chr7:71 737 530

106

LTR (LTR12C)

1

chr7:76 937 894

318

SINE (AluYa5)

1

chr7:77 534 007

176

Retroposon (SVA_F)

1

chr7:81 049 372

294

SINE (AluYb8)

1

chr7:83 222 425

314

SINE (AluYb8)

1

chr7:83 460 625

63

LTR (HERVH-int)

1

chr7:83 871 366

186

SINE (AluYc)

1

chr7:84 299 804

69

SINE (AluY)

1

chr7:98 568 472

326

SINE (AluYa5)

1

chr7:109 017 025

51

LINE (L1PREC2)

1

chr7:109 643 280

328

SINE (AluYb8)

1

chr7:114 192 070

49

SINE (AluSx4)

1

chr7:118 443 246

317

SINE (AluYe5)

1

chr7:124 141 305

281

SINE (AluYk2)

1

chr7:125 022 558

167

LTR (THE1-int)

1

chr7:128 552 994

33

SINE (AluSq)

1

chr7:128 569 092

242

SINE (AluYa5)

1

chr7:129 476 156

91

Retroposon (SVA_F)

1

chr7:129 517 319

318

SINE (AluSx)

1

chr7:136 576 160

318

LTR (HERVL-int)

1

chr7:139 101 477

364

Retroposon (SVA_A)

1

chr7:142 659 889

329

SINE (AluYb8)

1

chr7:149 554 812

49

Retroposon (SVA_F)

1

chr7:152 540 441

130

SINE (AluSx)

1

chr7:155 066 495

319

SINE (AluYk2)

1

chr7:155 096 904

73

Retroposon (SVA_B)

1

chr7:157 558 082

339

SINE (AluYb8)

1

chr7:157 656 079

316

SINE (AluY)

1

chr8:2 089 226

45

SINE (Alu)

1

chr8:6 187 437

317

SINE (AluYk2)

1

chr8:6 196 793

91

LINE (L1P2)

1

chr8:9 153 999

48

Retroposon (SVA_F)

1

chr8:9 950 379

327

SINE (AluYb8)

1

chr8:10 468 757

319

SINE (AluYa5)

1

chr8:13 059 194

154

SINE (AluSx4)

1

chr8:16 245 296

275

SINE (AluYa5)

1

chr8:22 922 448

348

SINE (AluYb8)

1

chr8:41 412 938

332

SINE (AluYb8)

1

chr8:54 125 427

225

Retroposon (SVA_F)

1

chr8:54 750 628

41

LTR (LTR12F)

1

chr8:61 752 508

100

Retroposon (SVA_F)

1

chr8:64 686 420

77

Retroposon (SVA_F)

1

chr8:69 245 767

39

Retroposon (SVA_E)

1

chr8:71 002 341

333

SINE (AluYb8)

1

chr8:73 845 055

41

Retroposon (SVA_F)

1

chr8:74 463 097

318

SINE (AluYa5)

1

chr8:86 302 813

115

LINE (L1HS)

1

chr8:86 964 152

73

LTR (MER52-int)

1

chr8:87 744 769

317

SINE (AluYa5)

1

chr8:94 591 076

48

Retroposon (SVA_F)

1

chr8:94 591 439

50

Retroposon (SVA_F)

1

chr8:95 771 303

320

SINE (AluYa5)

1

chr8:97 447 378

31

SINE (Alu)

1

chr8:97 841 152

40

Retroposon (SVA_D)

1

chr8:106 195 649

311

SINE (AluYb9)

1

chr8:116 034 779

275

SINE (AluYg6)

1

chr8:124 877 714

283

SINE (AluYa5)

1

chr8:126 853 220

290

SINE (AluY)

1

chr8:127 025 866

325

SINE (AluYb8)

1

chr8:127 316 510

48

Retroposon (SVA_F)

1

chr8:131 341 813

322

SINE (AluYa5)

1

chr8:138 313 721

313

SINE (AluY)

1

chr8:140 501 180

189

LINE (L2)

1

chr8:140 950 042

69

LTR (MER52A)

1

chr9:848 895

334

SINE (AluY)

1

chr9:2 298 287

191

LINE (L2a)

1

chr9:7 852 522

326

SINE (AluYb9)

1

chr9:15 365 380

391

LTR (LTR12D)

1

chr9:15 365 452

392

LTR (LTR12D)

1

chr9:16 977 542

38

Retroposon (SVA_F)

1

chr9:21 127 606

29

LINE (L1P1)

1

chr9:22 288 707

335

SINE (AluYa5)

1

chr9:26 492 844

36

Retroposon (SVA_F)

1

chr9:31 796 037

43

LINE (L1M3)

1

chr9:32 906 891

65

LTR (LTR12)

1

chr9:34 904 795

103

LINE (L1PB)

1

chr9:34 937 015

46

Retroposon (SVA_F)

1

chr9:35 918 454

31

SINE (Alu)

1

chr9:38 767 762

313

SINE (AluYe5)

1

chr9:42 463 052

191

SINE (AluYb8)

1

chr9:67 083 505

299

SINE (AluY)

1

chr9:70 917 552

318

SINE (AluYa5)

1

chr9:71 929 859

335

SINE (AluYb8)

1

chr9:74 197 755

61

Retroposon (SVA_F)

1

chr9:88 689 440

293

LTR (PABL_A-int)

1

chr9:88 691 152

233

LTR (MER41-int)

1

chr9:97 796 578

39

Retroposon (SVA_F)

1

chr9:107 460 892

61

SINE (AluYa5)

1

chr9:109 499 102

307

SINE (AluYa5)

1

chr9:112 514 852

225

Retroposon (SVA_A)

1

chr9:112 525 962

261

Retroposon (SVA_F)

1

chr9:116 840 550

351

Retroposon (SVA_F)

1

chr9:120 292 891

315

SINE (AluYk2)

1

chr9:123 802 498

79

LINE (L2)

1

chr9:125 458 887

431

Retroposon (SVA_E)

1

chr9:125 577 664

258

Retroposon (SVA_F)

1

chr9:129 514 659

70

LTR (MER52A)

1

chr10:3 526 815

315

SINE (AluYg6)

1

chr10:9 469 017

316

SINE (AluYa5)

1

chr10:14 442 801

327

SINE (AluYa5)

1

chr10:17 950 558

118

LTR (LTR12D)

1

chr10:21 057 584

49

SINE (Alu)

1

chr10:21 737 161

34

SINE (AluJb)

1

chr10:23 486 747

330

SINE (AluYb8)

1

chr10:25 756 463

209

LTR (LTR12C)

1

chr10:27 355 669

391

LINE (L1PA7)

1

chr10:28 813 597

314

SINE (AluY)

1

chr10:30 607 170

126

SINE (AluSx)

1

chr10:32 647 469

54

SINE (FRAM)

1

chr10:35 706 124

317

SINE (AluY)

1

chr10:36 657 456

304

SINE (AluY)

1

chr10:39 479 344

342

LINE (L1P1)

1

chr10:46 876 544

303

SINE (AluYe5)

1

chr10:47 319 408

303

SINE (AluYa5)

1

chr10:52 102 653

275

SINE (AluYk2)

1

chr10:52 707 167

323

SINE (AluY)

1

chr10:53 046 194

313

SINE (AluYe5)

1

chr10:54 167 762

83

LTR (HERVH-int)

1

chr10:54 223 519

324

SINE (AluYa5)

1

chr10:55 002 597

62

LTR (LOR1-int)

1

chr10:56 214 858

302

SINE (AluYa5)

1

chr10:56 724 090

48

SINE (AluYh7)

1

chr10:59 225 142

326

SINE (AluYa5)

1

chr10:62 751 124

324

SINE (AluYa5)

1

chr10:62 928 980

39

Retroposon (SVA_A)

1

chr10:68 235 132

326

SINE (AluYb8)

1

chr10:69 850 403

310

SINE (AluYa5)

1

chr10:69 992 835

494

Retroposon (SVA_E)

1

chr10:70 239 928

110

Retroposon (SVA_A)

1

chr10:70 407 971

341

Retroposon (SVA_E)

1

chr10:74 470 576

142

LINE (L1M3)

1

chr10:75 333 382

180

Retroposon (SVA_F)

1

chr10:75 333 655

87

Retroposon (SVA_F)

1

chr10:83 907 450

208

LTR (LTR69)

1

chr10:87 613 907

326

SINE (AluYb8)

1

chr10:87 655 672

142

SINE (AluYa5)

1

chr10:92 975 822

223

Retroposon (SVA_A)

1

chr10:99 251 497

95

LINE (L1P4)

1

chr10:101 975 999

320

SINE (AluYa5)

1

chr10:102 036 178

141

Retroposon (SVA_F)

1

chr10:104 057 438

194

SINE (AluYb8)

1

chr10:106 131 787

293

SINE (AluY)

1

chr10:107 231 509

320

SINE (AluY)

1

chr10:119 261 069

48

Retroposon (SVA_F)

1

chr10:120 215 119

402

Retroposon (SVA_F)

1

chr10:120 798 700

39

Retroposon (SVA_F)

1

chr10:130 096 568

97

LINE (L1PA7)

1

chr11:696 721

134

SINE (AluJb)

1

chr11:2 238 133

61

LTR (ERVL-B4-int)

1

chr11:3 246 565

142

SINE (AluYa5)

1

chr11:4 283 214

156

Retroposon (SVA_B)

1

chr11:8 865 752

318

SINE (AluYk2)

1

chr11:13 791 469

332

SINE (AluYb9)

1

chr11:19 860 081

223

Retroposon (SVA_E)

1

chr11:22 241 253

124

LINE (L1PA16)

1

chr11:23 336 957

313

SINE (AluYa5)

1

chr11:32 870 496

331

SINE (AluYb8)

1

chr11:37 684 733

318

SINE (AluYa5)

1

chr11:41 072 280

87

DNA (Tigger1)

1

chr11:45 738 460

277

Retroposon (SVA_B)

1

chr11:47 097 418

48

Retroposon (SVA_F)

1

chr11:47 429 529

42

SINE (AluJb)

1

chr11:48 734 293

348

LINE (L1HS)

1

chr11:48 911 556

314

SINE (AluY)

1

chr11:55 553 016

337

SINE (AluY)

1

chr11:56 535 869

316

SINE (AluYg6)

1

chr11:58 006 638

131

SINE (AluYa5)

1

chr11:58 139 863

65

LINE (L1P2)

1

chr11:59 645 329

383

Retroposon (SVA_E)

1

chr11:61 377 728

311

SINE (AluYk12)

1

chr11:63 931 433

308

SINE (AluSx)

1

chr11:65 239 632

130

Retroposon (SVA_F)

1

chr11:74 066 263

48

LINE (L1PA5)

1

chr11:74 353 859

76

Retroposon (SVA_C)

1

chr11:83 133 354

39

Retroposon (SVA_B)

1

chr11:86 110 821

355

Retroposon (SVA_F)

1

chr11:89 175 768

323

SINE (AluY)

1

chr11:90 267 331

186

LINE (L1P3)

1

chr11:91 420 411

175

SINE (AluYc)

1

chr11:93 621 562

51

LTR (THE1C)

1

chr11:93 946 760

454

Retroposon (SVA_E)

1

chr11:95 135 520

41

SINE (Alu)

1

chr11:95 320 834

49

Retroposon (SVA_F)

1

chr11:95 321 129

50

Retroposon (SVA_F)

1

chr11:98 770 105

208

Retroposon (SVA_A)

1

chr11:103 330 537

324

SINE (AluYb8)

1

chr11:106 195 313

136

SINE (AluSx)

1

chr11:106 299 739

313

SINE (AluYa5)

1

chr11:111 211 677

43

LINE (L1MC)

1

chr11:116 130 921

182

LTR (HERVIP10FH-int)

1

chr11:119 253 538

265

Retroposon (SVA_A)

1

chr11:125 863 407

266

Retroposon (SVA_F)

1

chr11:125 863 905

129

Retroposon (SVA_D)

1

chr11:129 889 646

315

SINE (AluYa5)

1

chr11:131 308 282

134

SINE (AluSz)

1

chr11:134 435 747

317

LINE (L1HS)

1

chr12:676 194

133

SINE (AluYk2)

1

chr12:3 768 367

133

SINE (AluJb)

1

chr12:7 451 371

285

SINE (AluYa5)

1

chr12:8 184 249

400

Retroposon (SVA_F)

1

chr12:8 184 716

48

Retroposon (SVA_F)

1

chr12:10 081 587

318

SINE (AluY)

1

chr12:19 340 417

36

Retroposon (SVA_F)

1

chr12:20 755 735

319

SINE (AluYb9)

1

chr12:20 764 123

41

LTR (HERVH-int)

1

chr12:21 970 847

320

SINE (AluYa5)

1

chr12:25 309 998

328

SINE (AluY)

1

chr12:26 784 941

39

Retroposon (SVA_D)

1

chr12:29 411 798

33

LINE (L1P1)

1

chr12:31 650 024

315

SINE (AluSx)

1

chr12:32 098 864

144

SINE (AluSx)

1

chr12:45 025 760

310

SINE (AluYa5)

1

chr12:48 332 461

97

Retroposon (SVA_F)

1

chr12:48 500 573

220

Retroposon (SVA_F)

1

chr12:53 354 590

320

SINE (AluYa5)

1

chr12:54 488 739

39

Retroposon (SVA_D)

1

chr12:57 689 480

313

SINE (AluYa5)

1

chr12:58 825 264

321

SINE (AluYb8)

1

chr12:60 660 033

282

SINE (AluYb8)

1

chr12:63 686 932

118

Retroposon (SVA_A)

1

chr12:63 708 449

76

SINE (AluSg)

1

chr12:64 783 847

188

SINE (AluSp)

1

chr12:77 093 950

174

LINE (L1P1)

1

chr12:78 605 707

304

SINE (AluYb8)

1

chr12:86 811 026

109

LINE (L1MD)

1

chr12:87 477 036

319

SINE (AluY)

1

chr12:87 944 381

306

SINE (AluYa5)

1

chr12:92 118 740

28

DNA (HSMAR2)

1

chr12:93 291 513

133

SINE (AluY)

1

chr12:95 355 501

310

SINE (AluSx)

1

chr12:97 101 565

330

SINE (AluYb8)

1

chr12:99 387 859

177

SINE (AluY)

1

chr12:100 294 427

196

Retroposon (SVA_D)

1

chr12:103 643 940

48

Retroposon (SVA_F)

1

chr12:104 923 205

187

SINE (AluYb9)

1

chr12:106 209 872

286

LINE (L1P3)

1

chr12:124 101 925

48

Retroposon (SVA_F)

1

chr12:125 036 157

162

SINE (AluJb)

1

chr12:131 926 411

79

Retroposon (SVA_A)

1

chr13:18 196 939

197

SINE (AluYb8)

1

chr13:19 032 018

329

SINE (AluYb9)

1

chr13:19 251 656

416

LINE (L1PBa)

1

chr13:19 779 555

48

Retroposon (SVA_F)

1

chr13:21 320 624

286

SINE (AluYb8)

1

chr13:21 614 339

316

SINE (AluYa5)

1

chr13:21 956 209

313

SINE (AluYa5)

1

chr13:22 859 002

47

Retroposon (SVA_F)

1

chr13:22 859 350

39

Retroposon (SVA_C)

1

chr13:25 264 752

135

SINE (AluYa5)

1

chr13:28 990 621

66

LTR (LTR12)

1

chr13:37 215 551

164

SINE (AluSx)

1

chr13:37 607 837

337

SINE (AluYb9)

1

chr13:39 789 563

28

LTR (LTR10F)

1

chr13:40 955 535

98

Retroposon (SVA_F)

1

chr13:42 141 027

29

LINE (L1PA5)

1

chr13:42 476 405

110

Retroposon (SVA_A)

1

chr13:46 521 202

318

SINE (AluYa5)

1

chr13:46 557 525

328

SINE (AluYa5)

1

chr13:49 599 221

314

SINE (AluYk12)

1

chr13:52 080 023

39

Retroposon (SVA_A)

1

chr13:54 937 595

55

LTR (LTR21A)

1

chr13:57 014 879

119

SINE (AluY)

1

chr13:58 046 916

290

SINE (AluYb9)

1

chr13:58 773 222

85

LTR (LTR12C)

1

chr13:58 822 744

315

SINE (AluYg6)

1

chr13:60 037 033

130

LINE (L1MEd)

1

chr13:60 715 401

390

LINE (L1HS)

1

chr13:67 329 321

237

SINE (AluYe5)

1

chr13:78 010 527

313

SINE (AluYa5)

1

chr13:78 077 535

313

SINE (AluYa5)

1

chr13:78 697 449

318

SINE (AluYa5)

1

chr13:86 740 691

291

SINE (AluY)

1

chr13:87 043 983

254

SINE (AluYe5)

1

chr13:89 898 305

322

SINE (AluYe5)

1

chr13:90 291 101

57

LTR (HERVP71A-int)

1

chr13:90 295 387

321

SINE (AluY)

1

chr13:91 861 711

294

SINE (AluYa5)

1

chr13:93 176 152

301

SINE (AluYa5)

1

chr13:94 597 248

144

SINE (AluYa5)

1

chr13:99 242 798

40

Retroposon (SVA_B)

1

chr13:99 430 356

320

SINE (AluY)

1

chr13:107 887 391

62

LTR (MSTA)

1

chr13:108 067 459

316

SINE (AluYb8)

1

chr13:113 357 049

132

SINE (AluSc)

1

chr14:24 473 726

118

LTR (LTR12D)

1

chr14:27 832 046

439

LINE (L1HS)

1

chr14:31 408 945

36

SINE (AluYb8)

1

chr14:34 483 262

316

SINE (AluY)

1

chr14:39 285 662

47

Retroposon (SVA_F)

1

chr14:39 843 742

321

SINE (AluYa5)

1

chr14:42 772 605

66

LINE (L1P3)

1

chr14:43 602 083

513

LINE (L1P1)

1

chr14:50 965 360

326

SINE (AluYb8)

1

chr14:52 837 362

56

LTR (MER51B)

1

chr14:63 139 925

28

LINE (L1P1)

1

chr14:70 397 965

57

LTR (MER52D)

1

chr14:73 353 583

134

SINE (AluSz6)

1

chr14:73 546 923

185

SINE (AluYe5)

1

chr14:82 276 282

195

LTR (LTR8)

1

chr14:85 829 872

39

Retroposon (SVA_E)

1

chr14:86 164 343

314

SINE (AluY)

1

chr14:89 608 202

143

SINE (AluSx)

1

chr14:90 718 834

322

SINE (AluYb9)

1

chr14:91 649 660

317

SINE (AluY)

1

chr14:91 658 708

312

SINE (AluYa5)

1

chr14:98 678 770

53

SINE (Alu)

1

chr14:102 562 101

312

SINE (AluY)

1

chr14:102 676 504

171

Retroposon (SVA_F)

1

chr14:105 111 436

226

Retroposon (SVA_F)

1

chr14:105 112 172

257

Retroposon (SVA_F)

1

chr15:23 103 992

321

SINE (AluYb8)

1

chr15:44 531 316

302

SINE (AluYa5)

1

chr15:45 277 713

311

SINE (AluYa5)

1

chr15:45 290 055

32

SINE (Alu)

1

chr15:45 293 091

48

Retroposon (SVA_F)

1

chr15:47 279 101

87

LINE (L1P1)

1

chr15:50 877 475

60

SINE (MIR3)

1

chr15:56 541 721

296

SINE (AluY)

1

chr15:62 026 065

327

SINE (AluY)

1

chr15:66 375 798

323

SINE (AluYb9)

1

chr15:67 352 555

318

SINE (AluYa5)

1

chr15:71 757 533

133

SINE (AluJr4)

1

chr15:71 769 394

126

Retroposon (SVA_F)

1

chr15:72 347 195

318

SINE (AluYa5)

1

chr15:72 396 768

527

Retroposon (SVA_F)

1

chr15:75 481 586

401

Retroposon (SVA_F)

1

chr15:75 503 575

196

Retroposon (SVA_E)

1

chr15:80 355 807

93

SINE (AluSp)

1

chr15:85 681 718

325

SINE (AluYk2)

1

chr15:88 941 916

118

Retroposon (SVA_A)

1

chr15:88 942 035

67

Retroposon (SVA_B)

1

chr15:89 854 810

78

Retroposon (SVA_F)

1

chr15:93 292 547

315

SINE (AluYa5)

1

chr15:95 584 536

291

SINE (AluYa5)

1

chr16:5 202 288

126

Retroposon (SVA_A)

1

chr16:5 295 016

320

SINE (AluYa5)

1

chr16:10 992 534

314

SINE (AluYa5)

1

chr16:11 940 567

36

SINE (AluSg4)

1

chr16:18 079 930

36

SINE (FRAM)

1

chr16:24 108 962

48

Retroposon (SVA_F)

1

chr16:31 104 754

353

Retroposon (SVA_E)

1

chr16:31 105 127

147

Retroposon (SVA_F)

1

chr16:36 260 385

242

LINE (L1HS)

1

chr16:50 358 349

29

SINE (AluJb)

1

chr16:53 841 055

324

SINE (AluYb8)

1

chr16:69 738 409

99

SINE (AluSc8)

1

chr16:75 574 801

43

SINE (AluYh3)

1

chr16:81 095 628

27

SINE (Alu)

1

chr16:82 131 072

299

SINE (AluY)

1

chr16:82 165 723

36

DNA (Tigger3c)

1

chr16:89 224 966

334

SINE (AluY)

1

chr17:1 276 784

434

SINE (AluSx)

1

chr17:1 690 049

38

Retroposon (SVA_D)

1

chr17:2 448 181

125

Retroposon (SVA_B)

1

chr17:2 548 310

169

SINE (AluSx)

1

chr17:4 274 926

27

SINE (Alu)

1

chr17:4 411 686

259

LINE (L1HS)

1

chr17:5 069 184

325

SINE (AluSx)

1

chr17:16 095 666

104

Retroposon (SVA_F)

1

chr17:16 330 605

317

SINE (AluYe5)

1

chr17:16 699 504

133

SINE (AluYk2)

1

chr17:19 627 935

524

Retroposon (SVA_F)

1

chr17:20 638 094

193

SINE (AluSx)

1

chr17:28 604 078

97

Retroposon (SVA_F)

1

chr17:31 675 941

65

LTR (LTR12)

1

chr17:38 930 729

49

Retroposon (SVA_F)

1

chr17:42 973 221

273

Retroposon (SVA_F)

1

chr17:46 252 889

39

Retroposon (SVA_D)

1

chr17:46 253 241

39

Retroposon (SVA_D)

1

chr17:47 325 026

261

SINE (AluYa5)

1

chr17:49 125 777

224

Retroposon (SVA_F)

1

chr17:52 321 128

321

SINE (AluYa5)

1

chr17:52 953 842

311

SINE (AluYa5)

1

chr17:62 996 973

190

SINE (AluYc)

1

chr17:63 488 528

290

SINE (AluYa5)

1

chr17:67 763 856

42

SINE (AluSz6)

1

chr17:72 700 020

318

SINE (AluYa5)

1

chr17:75 298 385

137

SINE (AluSx3)

1

chr17:76 610 524

41

LTR (HERVH-int)

1

chr18:1 235 775

321

SINE (AluY)

1

chr18:12 980 715

49

Retroposon (SVA_F)

1

chr18:15 779 866

217

LINE (L1P1)

1

chr18:22 091 021

316

SINE (AluY)

1

chr18:29 997 108

32

LTR (THE1D-int)

1

chr18:30 220 884

320

SINE (AluYb8)

1

chr18:35 271 443

40

LTR (LTR12C)

1

chr18:36 077 580

48

Retroposon (SVA_F)

1

chr18:48 997 462

113

SINE (AluYb8)

1

chr18:49 621 064

243

SINE (AluSx)

1

chr18:54 236 358

167

LINE (L1HS)

1

chr18:63 018 865

321

SINE (AluY)

1

chr18:65 820 032

317

SINE (AluY)

1

chr18:68 731 923

315

SINE (AluYk2)

1

chr18:68 905 255

332

SINE (AluYb8)

1

chr18:76 241 968

322

SINE (AluYi6_4d)

1

chr18:76 851 081

311

SINE (AluYk2)

1

chr18:78 280 924

132

LINE (L1P4)

1

chr19:4 965 572

166

SINE (AluJb)

1

chr19:5 761 462

154

LTR (MSTA)

1

chr19:6 923 838

323

SINE (AluYb8)

1

chr19:10 715 006

135

SINE (AluSz)

1

chr19:12 621 713

307

Retroposon (SVA_F)

1

chr19:13 703 694

126

Retroposon (SVA_F)

1

chr19:17 722 278

164

SINE (AluJb)

1

chr19:20 149 557

148

Retroposon (SVA_E)

1

chr19:20 563 164

316

SINE (AluYj4)

1

chr19:20 858 616

38

LTR (HERVIP10FH-int)

1

chr19:23 734 249

312

SINE (AluYb8)

1

chr19:23 768 604

321

SINE (AluYa5)

1

chr19:24 243 583

69

LTR (MER11B)

1

chr19:39 905 477

312

SINE (AluSx)

1

chr19:40 648 243

97

Retroposon (SVA_F)

1

chr19:40 920 013

65

LTR (MER11A)

1

chr19:47 926 362

317

LINE (L1PREC2)

1

chr19:50 585 457

100

SINE (AluJb)

1

chr19:52 720 518

73

Retroposon (SVA_A)

1

chr20:306 267

174

SINE (AluJb)

1

chr20:3 018 857

47

Retroposon (SVA_F)

1

chr20:4 033 198

215

Retroposon (SVA_F)

1

chr20:5 040 476

283

SINE (AluY)

1

chr20:6 665 191

64

DNA (MER33)

1

chr20:15 152 472

41

LTR (HERVH-int)

1

chr20:16 134 623

36

LTR (MER41A)

1

chr20:18 689 894

175

SINE (AluJb)

1

chr20:23 765 577

78

LINE (L1PA15-16)

1

chr20:28 790 008

45

LINE (L1P1)

1

chr20:29 307 454

181

SINE (AluSq)

1

chr20:29 387 580

72

LINE (L1M1)

1

chr20:30 406 410

101

Retroposon (SVA_D)

1

chr20:31 470 609

47

Retroposon (SVA_F)

1

chr20:32 176 933

175

Retroposon (SVA_F)

1

chr20:35 564 380

148

SINE (AluSg)

1

chr20:44 297 116

37

SINE (AluSp)

1

chr20:45 645 644

225

Retroposon (SVA_F)

1

chr20:50 366 198

36

SINE (Alu)

1

chr20:50 685 661

314

SINE (AluY)

1

chr20:51 953 822

316

SINE (AluYa5)

1

chr20:54 108 682

313

SINE (AluYa5)

1

chr20:55 145 299

315

SINE (AluYa5)

1

chr21:5 216 449

222

LINE (L1M3)

1

chr21:10 508 068

56

LINE (L1M3)

1

chr21:15 089 462

276

SINE (AluYa5)

1

chr21:20 142 805

314

SINE (AluY)

1

chr21:24 981 909

324

SINE (AluY)

1

chr21:32 482 930

67

SINE (AluJb)

1

chr21:35 865 629

323

SINE (AluYa5)

1

chr21:37 685 537

314

SINE (AluYa5)

1

chr21:42 965 782

321

SINE (AluYb8)

1

chr21:43 823 144

69

LTR (MLT1D)

1

chr21:44 468 497

134

SINE (AluSz)

1

chr21:44 825 056

126

Retroposon (SVA_F)

1

chr22:11 860 399

311

SINE (AluYa5)

1

chr22:15 830 536

136

SINE (AluSx)

1

chr22:17 567 653

357

SINE (AluYb8)

1

chr22:19 373 922

126

SINE (AluYa5)

1

chr22:22 644 845

318

SINE (AluSx)

1

chr22:23 530 480

320

SINE (AluYb8)

1

chr22:25 277 728

48

Retroposon (SVA_F)

1

chr22:25 345 879

175

SINE (AluSx)

1

chr22:30 597 422

160

LTR (LTR12C)

1

chr22:31 024 654

334

SINE (AluY)

1

chr22:37 220 830

42

LTR (THE1C)

1

chr22:37 786 956

124

Retroposon (SVA_F)

1

chr22:40 501 143

130

Retroposon (SVA_F)

1

chr22:40 744 913

175

Retroposon (SVA_F)

1

chr22:41 552 575

39

SINE (AluJb)

1

chr22:46 509 527

45

DNA (MER20)

1

chrX:881 180

133

SINE (AluJb)

1

chrX:1 057 561

80

SINE (AluSx)

1

chrX:1 390 753

119

SINE (FLAM_C)

1

chrX:3 600 520

38

LINE (L1MB1)

1

chrX:8 978 447

89

LINE (L1P4)

1

chrX:12 963 684

48

Retroposon (SVA_F)

1

chrX:24 709 090

129

Retroposon (SVA_F)

1

chrX:29 333 929

49

Retroposon (SVA_F)

1

chrX:34 249 205

395

LINE (L1P1)

1

chrX:35 009 970

322

SINE (AluYi6)

1

chrX:42 285 660

398

Retroposon (SVA_E)

1

chrX:45 040 274

164

Retroposon (SVA_F)

1

chrX:52 729 421

98

LINE (L1PA4)

1

chrX:53 772 507

127

Retroposon (SVA_F)

1

chrX:65 457 297

346

Retroposon (SVA_F)

1

chrX:66 519 345

52

LINE (L1PREC2)

1

chrX:68 326 721

624

Retroposon (SVA_F)

1

chrX:70 350 008

116

Retroposon (SVA_A)

1

chrX:75 334 747

38

Retroposon (SVA_B)

1

chrX:76 218 142

599

Retroposon (SVA_F)

1

chrX:77 354 184

320

SINE (AluYa5)

1

chrX:78 265 516

201

Retroposon (SVA_F)

1

chrX:80 215 124

116

Retroposon (SVA_A)

1

chrX:88 864 162

47

LTR (LTR12D)

1

chrX:91 279 137

242

SINE (AluYa5)

1

chrX:97 200 437

32

LINE (L1P3)

1

chrX:104 079 600

37

LINE (L1P3)

1

chrX:107 501 516

133

SINE (AluYb8)

1

chrX:115 436 029

295

SINE (AluY)

1

chrX:124 128 746

222

Retroposon (SVA_F)

1

chrX:128 450 745

54

LTR (THE1C)

1

chrX:137 267 661

334

SINE (AluY)

1

chrX:137 875 124

299

SINE (AluY)

1

chrX:138 269 887

51

LTR (LTR7)

1

chrX:146 808 266

319

SINE (AluYb8)

1

chrX:152 833 245

315

SINE (AluY)

1

chrY:11 349 044

100

SINE (AluSq2)

1

chrY:11 384 811

209

SINE (AluYa5)

1

chrY:56 867 597

132

SINE (AluSc)

1


  • 2 313 TE insertions were found with an AF ≥ 0.5.
A Manhattan plot of AFs is shown below.
Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

A) Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat
family

Repeat
subfamily

Unique

Total
(lax)

Total
(strict)

DNA

hAT

4

8

8

TcMar

7

14

14

LINE

CR1

1

2

2

L1

278

544

536

L2

11

22

21

LTR

ERV1

116

221

210

ERVK

16

30

30

ERVL

37

74

74

Retroposon

SVA

444

866

804

SINE

Alu

1 549

3 073

3 061

MIR

5

10

10

Total

-

2 468

4 864

4 770

2.1 Class I Elements

2.1.1 Distribution

A) Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name

Unique

Total
(lax)

Total
(strict)

SVA A

53

103

95

SVA B

14

27

25

SVA C

15

30

26

SVA D

15

30

26

SVA E

66

130

124

SVA F

276

536

498

SVA F1

5

10

10

Total

444

866

804

Click to show table with Alu counts by name.
Count of _Alu_ elements by name

Name

Unique

Total
(lax)

Total
(strict)

Alu

8

15

15

AluJb

36

71

70

AluJo

3

6

6

AluJr4

3

6

6

AluSc

5

9

9

AluSc8

5

10

9

AluSg

10

20

20

AluSg4

1

1

1

AluSg7

1

2

2

AluSp

9

18

18

AluSq

11

22

22

AluSq2

3

6

6

AluSx

75

145

144

AluSx3

4

8

8

AluSx4

6

11

10

AluSz

8

16

16

AluSz6

4

8

7

AluY

316

627

623

AluYa5

516

1 029

1 029

AluYa8

6

12

12

AluYb8

270

538

537

AluYb9

38

76

76

AluYc

21

41

40

AluYd8

11

22

22

AluYe5

45

89

89

AluYg6

34

67

67

AluYh3

1

1

1

AluYh7

7

14

14

AluYi6

11

22

22

AluYi6 4d

2

4

4

AluYj4

3

6

6

AluYk11

7

14

14

AluYk12

5

10

10

AluYk2

49

98

98

AluYk3

2

4

4

AluYk4

2

4

4

AluYm1

2

4

4

FLAM C

5

9

9

FRAM

4

8

7

Total

1 549

3 073

3 061

Click to show table with L1 counts by name.
Count of L1 elements by name

Name

Unique

Total
(lax)

Total
(strict)

L1HS

109

214

213

L1M

2

4

4

L1M1

7

14

14

L1M2

2

4

4

L1M2a1

1

2

2

L1M3

7

14

13

L1M4

5

8

8

L1M4b

1

2

2

L1M4c

1

2

2

L1M5

6

11

11

L1MA6

1

2

1

L1MB3

2

4

4

L1MB5

2

3

3

L1MB8

1

2

2

L1MC

2

4

4

L1MC3

1

2

2

L1MC4

2

4

4

L1MC4a

2

4

4

L1MC5

2

4

4

L1MCa

2

4

4

L1MD

3

6

6

L1MD3

2

4

4

L1ME1

1

2

2

L1ME3A

1

2

2

L1MEc

1

2

2

L1MEd

1

2

2

L1MEf

1

2

2

L1MEg

1

2

2

L1P1

28

55

54

L1P2

9

17

17

L1P3

10

20

18

L1P3b

1

2

2

L1P4

9

18

17

L1P5

4

7

7

L1PA10

3

5

5

L1PA11

1

2

2

L1PA12

2

4

4

L1PA13

1

2

2

L1PA15-16

1

2

2

L1PA16

2

4

4

L1PA17

1

2

1

L1PA2

8

16

16

L1PA3

3

6

6

L1PA4

4

8

8

L1PA6

2

4

4

L1PA7

2

4

4

L1PA8

1

2

2

L1PA8A

2

4

4

L1PB

2

4

4

L1PB1

1

2

2

L1PBa

2

4

4

L1PBa1

2

4

4

L1PBb

2

4

4

L1PREC2

6

12

12

Total

278

544

536

2.1.2 Class II TEs on gene sequences

Click to show table with 1319 rows.

Position

Length

Type

Gene

Annotation

Occurrences

chr1:1 546 888

121

SINE (Alu)

SSU72

Promoter

2

chr1:1 546 888

121

SINE (Alu)

SSU72

Intron

2

chr1:1 885 904

328

SINE (Alu)

GNB1

Intron

2

chr1:1 993 703

146

SINE (Alu)

CFAP74

Intron

2

chr1:7 803 432

181

SINE (Alu)

PER3

Intron

2

chr1:8 386 566

313

SINE (Alu)

RERE

Intron

2

chr1:8 502 128

581

Retroposon (SVA)

RERE

Intron

2

chr1:9 170 364

317

SINE (Alu)

MIR34AHG

Intron

2

chr1:9 968 550

140

SINE (Alu)

NMNAT1

Intron

2

chr1:15 163 622

135

SINE (Alu)

TMEM51

Intron

2

chr1:16 424 203

134

SINE (Alu)

SPATA21

Intron

2

chr1:16 868 227

314

SINE (Alu)

CROCC

Intron

2

chr1:21 166 094

316

SINE (Alu)

EIF4G3

Intron

2

chr1:26 904 034

320

SINE (Alu)

NUDC

Intron

2

chr1:28 410 097

124

SINE (Alu)

PHACTR4

Intron

2

chr1:29 100 312

322

SINE (Alu)

EPB41

Intron

2

chr1:33 052 506

100

Retroposon (SVA)

AK2

Intron

2

chr1:37 837 431

337

SINE (Alu)

MTF1

Intron

2

chr1:37 967 098

317

SINE (Alu)

SF3A3

Intron

2

chr1:38 485 066

75

SINE (Alu)

LINC01685

Intron

2

chr1:39 234 642

517

Retroposon (SVA)

MACF1

Intron

2

chr1:43 743 238

307

SINE (Alu)

KDM4A

Intron

2

chr1:43 780 660

2 612

Retroposon (SVA)

KDM4A

Intron

2

chr1:44 876 567

399

Retroposon (SVA)

EIF2B3

Promoter

2

chr1:44 876 567

399

Retroposon (SVA)

EIF2B3

Intron

2

chr1:45 330 021

326

SINE (Alu)

MUTYH

Intron

2

chr1:45 497 642

654

Retroposon (SVA)

CCDC163

Intron

2

chr1:46 213 357

335

SINE (Alu)

LURAP1

Intron

2

chr1:50 446 975

333

SINE (Alu)

FAF1

Intron

2

chr1:51 711 458

355

Retroposon (SVA)

OSBPL9

Intron

2

chr1:52 869 965

98

Retroposon (SVA)

ZYG11A

Intron

2

chr1:54 561 779

180

Retroposon (SVA)

ACOT11

Intron

2

chr1:54 561 916

49

Retroposon (SVA)

ACOT11

Intron

1

chr1:57 606 184

211

SINE (Alu)

DAB1

Intron

2

chr1:59 125 792

322

SINE (Alu)

LINC01358

Intron

2

chr1:59 406 189

319

SINE (Alu)

FGGY

Intron

2

chr1:63 473 989

117

Retroposon (SVA)

ITGB3BP

Intron

2

chr1:64 492 377

346

SINE (Alu)

CACHD1

Intron

2

chr1:64 881 268

333

SINE (Alu)

JAK1

Intron

2

chr1:65 590 242

315

SINE (Alu)

LEPR

Intron

2

chr1:69 625 372

325

SINE (Alu)

LRRC7

Intron

2

chr1:69 625 526

325

SINE (Alu)

LRRC7

Intron

2

chr1:74 727 204

3 708

LINE (L1)

CRYZ

Intron

2

chr1:76 390 944

311

SINE (Alu)

ST6GALNAC3

Intron

2

chr1:77 003 278

334

SINE (Alu)

ST6GALNAC5

Intron

2

chr1:77 112 226

328

SINE (Alu)

PIGK

Intron

2

chr1:77 168 628

316

SINE (Alu)

PIGK

Intron

2

chr1:79 116 389

307

SINE (Alu)

ADGRL4

Intron

2

chr1:81 846 355

322

SINE (Alu)

ADGRL2

Intron

2

chr1:83 144 050

1 742

LINE (L1)

LINC01362

Intron

2

chr1:89 905 000

268

SINE (Alu)

LRRC8D

Intron

2

chr1:92 701 961

321

SINE (Alu)

EVI5

Intron

2

chr1:94 877 128

299

SINE (Alu)

SLC44A3

Intron

2

chr1:100 086 086

314

SINE (Alu)

SASS6

Intron

2

chr1:107 599 843

308

SINE (Alu)

VAV3

Intron

2

chr1:110 005 956

218

SINE (Alu)

AHCYL1

Intron

2

chr1:111 581 052

320

SINE (Alu)

RAP1A

Intron

2

chr1:112 193 371

326

SINE (Alu)

LINC02884

Intron

2

chr1:112 449 371

314

SINE (Alu)

CTTNBP2NL

Intron

2

chr1:114 658 770

304

SINE (Alu)

DENND2C

Intron

2

chr1:117 429 536

99

Retroposon (SVA)

MAN1A2

Intron

1

chr1:117 430 034

174

Retroposon (SVA)

MAN1A2

Intron

2

chr1:147 488 600

103

SINE (MIR)

LINC00624

Intron

2

chr1:147 653 127

306

SINE (Alu)

ACP6

Intron

2

chr1:147 949 446

117

Retroposon (SVA)

GPR89B

Intron

2

chr1:151 769 292

91

Retroposon (SVA)

OAZ3

Intron

2

chr1:155 700 905

350

Retroposon (SVA)

DAP3

Intron

2

chr1:155 954 588

320

SINE (Alu)

ARHGEF2

Intron

2

chr1:156 327 929

89

Retroposon (SVA)

CCT3

Intron

2

chr1:156 328 044

142

Retroposon (SVA)

CCT3

Intron

1

chr1:162 791 517

317

SINE (Alu)

HSD17B7

Intron

2

chr1:163 344 640

327

SINE (Alu)

NUF2

Intron

2

chr1:165 690 066

272

SINE (Alu)

ALDH9A1

Intron

2

chr1:167 536 856

234

SINE (Alu)

LOC107985224

Intron

2

chr1:169 993 600

163

SINE (Alu)

KIFAP3

Intron

2

chr1:170 682 342

96

SINE (Alu)

PRRX1

Intron

2

chr1:172 571 921

386

Retroposon (SVA)

SUCO

Intron

1

chr1:179 522 821

353

SINE (Alu)

AXDND1

Intron

2

chr1:180 701 807

281

LINE (L1)

XPR1

Intron

2

chr1:182 451 704

323

SINE (Alu)

RGSL1

Intron

2

chr1:191 848 294

318

SINE (Alu)

LINC02770

Intron

2

chr1:192 857 349

77

Retroposon (SVA)

LOC105371665

Intron

2

chr1:192 857 702

175

Retroposon (SVA)

LOC105371665

Intron

2

chr1:196 792 226

324

SINE (Alu)

CFH

Intron

2

chr1:198 846 183

284

SINE (Alu)

MIR181A1HG

Intron

2

chr1:204 269 326

317

SINE (Alu)

PLEKHA6

Intron

2

chr1:210 745 043

121

SINE (Alu)

KCNH1

Intron

2

chr1:212 592 491

315

SINE (Alu)

ATF3

Intron

2

chr1:215 111 930

317

SINE (Alu)

KCNK2

Intron

2

chr1:216 898 707

330

SINE (Alu)

ESRRG

Intron

2

chr1:217 828 482

324

SINE (Alu)

SPATA17

Intron

2

chr1:219 010 830

100

LINE (L1)

LYPLAL1-DT

Intron

2

chr1:220 781 002

318

SINE (Alu)

MTARC2

Intron

2

chr1:222 697 340

328

SINE (Alu)

AIDA

Intron

2

chr1:223 123 062

330

SINE (Alu)

TLR5

Intron

2

chr1:227 275 238

323

SINE (Alu)

CDC42BPA

Intron

2

chr1:227 314 751

134

SINE (Alu)

CDC42BPA

Intron

2

chr1:227 414 560

315

SINE (Alu)

LINC01641

Intron

2

chr1:230 949 403

304

SINE (Alu)

TTC13

Intron

2

chr1:233 206 358

314

SINE (Alu)

PCNX2

Intron

2

chr1:235 635 571

168

LTR (ERVL)

GNG4

Intron

2

chr1:236 374 894

2 105

Retroposon (SVA)

EDARADD

Intron

2

chr1:236 387 105

275

Retroposon (SVA)

EDARADD

Intron

2

chr1:237 286 555

204

LINE (L1)

RYR2

Intron

2

chr1:240 060 352

54

SINE (Alu)

FMN2

Intron

2

chr1:241 326 644

326

SINE (Alu)

RGS7

Intron

2

chr1:243 214 577

324

SINE (Alu)

CEP170

Intron

2

chr1:245 826 009

323

SINE (Alu)

SMYD3

Intron

2

chr1:246 402 366

165

SINE (Alu)

SMYD3

Intron

2

chr1:246 429 027

318

SINE (Alu)

SMYD3

Intron

2

chr1:246 652 781

133

SINE (Alu)

CNST

Intron

2

chr1:248 911 737

126

Retroposon (SVA)

PGBD2

Intron

2

chr1:434 606

77

LINE (L1)

LOC112268260

Intron

1

chr1:710 578

318

SINE (Alu)

OR4F16

Intron

2

chr2:1 143 706

282

SINE (Alu)

SNTG2

Intron

2

chr2:1 467 941

331

SINE (Alu)

TPO

Intron

2

chr2:2 295 544

171

LTR (ERV1)

MYT1L

Intron

2

chr2:10 685 915

158

LINE (L2)

NOL10

Intron

2

chr2:11 213 564

312

SINE (Alu)

ROCK2

Intron

2

chr2:11 286 233

325

SINE (Alu)

ROCK2

Intron

2

chr2:15 611 912

95

Retroposon (SVA)

DDX1

Intron

2

chr2:21 573 937

297

SINE (Alu)

LOC105374320

Intron

2

chr2:27 539 841

492

Retroposon (SVA)

C2orf16

Intron

2

chr2:27 831 210

323

SINE (Alu)

BABAM2

Intron

2

chr2:31 336 819

318

SINE (Alu)

XDH

Intron

2

chr2:32 140 771

322

SINE (Alu)

SPAST

Intron

2

chr2:34 030 310

317

SINE (Alu)

LINC01317

Intron

2

chr2:36 777 087

305

SINE (Alu)

VIT

Intron

2

chr2:39 079 152

61

LINE (L1)

SOS1

Intron

2

chr2:39 088 182

316

SINE (Alu)

SOS1

Intron

2

chr2:40 386 532

329

SINE (Alu)

SLC8A1

Intron

2

chr2:44 588 991

260

Retroposon (SVA)

CAMKMT

Intron

2

chr2:44 598 695

317

SINE (Alu)

CAMKMT

Intron

2

chr2:46 701 810

291

SINE (Alu)

LINC01118

Intron

2

chr2:47 092 140

329

SINE (Alu)

STPG4

Intron

2

chr2:47 582 848

2 883

Retroposon (SVA)

MSH2

Intron

2

chr2:47 956 016

134

SINE (Alu)

LOC105374591

Intron

2

chr2:50 375 489

328

SINE (Alu)

NRXN1

Intron

2

chr2:51 768 829

311

SINE (Alu)

LOC730100

Intron

2

chr2:54 889 449

313

SINE (Alu)

EML6

Intron

2

chr2:56 146 383

319

SINE (Alu)

LOC105374690

Intron

2

chr2:59 647 122

242

SINE (Alu)

LOC105374754

Intron

2

chr2:60 418 626

63

LTR (ERV1)

MIR4432HG

Intron

2

chr2:63 552 086

328

SINE (Alu)

WDPCP

Intron

2

chr2:64 936 632

315

SINE (Alu)

LINC02245

Intron

2

chr2:65 106 650

306

SINE (Alu)

RAB1A

Intron

2

chr2:65 600 662

534

Retroposon (SVA)

LINC02934

Intron

2

chr2:65 600 671

1 339

Retroposon (SVA)

LINC02934

Intron

2

chr2:65 600 856

97

Retroposon (SVA)

LINC02934

Intron

2

chr2:66 431 844

323

SINE (Alu)

MEIS1-AS3

Intron

2

chr2:69 517 524

325

SINE (Alu)

AAK1

Intron

2

chr2:73 898 351

318

SINE (Alu)

ACTG2

Intron

2

chr2:74 061 581

351

Retroposon (SVA)

TET3

Intron

2

chr2:74 776 087

348

SINE (Alu)

LOC102724497

Intron

2

chr2:75 160 773

315

SINE (Alu)

LOC105374811

Intron

2

chr2:80 541 884

270

SINE (Alu)

CTNNA2

Intron

2

chr2:87 180 576

492

LINE (L1)

LOC102724642

Intron

2

chr2:95 857 174

329

SINE (Alu)

ANKRD36C

Intron

2

chr2:97 965 682

304

SINE (Alu)

TMEM131

Intron

2

chr2:104 078 052

74

LTR (ERV1)

LINC01965

Intron

2

chr2:107 308 150

272

SINE (Alu)

LINC01789

Intron

2

chr2:111 689 844

326

SINE (Alu)

MIR4435-2HG

Intron

2

chr2:111 958 964

326

SINE (Alu)

MERTK

Intron

2

chr2:113 348 853

318

SINE (Alu)

LINC02966

Intron

2

chr2:117 871 796

101

LINE (L1)

LOC101929908

Intron

2

chr2:118 042 423

74

LINE (L1)

LOC102723413

Intron

2

chr2:119 843 892

476

Retroposon (SVA)

PTPN4

Intron

1

chr2:119 843 905

646

Retroposon (SVA)

PTPN4

Intron

1

chr2:119 844 104

224

Retroposon (SVA)

PTPN4

Intron

2

chr2:122 573 068

317

SINE (Alu)

LOC105373595

Intron

2

chr2:127 881 317

322

SINE (Alu)

AMMECR1L

Intron

2

chr2:127 981 351

121

LTR (ERV1)

SAP130

Intron

2

chr2:130 095 311

6 054

LINE (L1)

POTEF

Intron

2

chr2:131 765 910

259

SINE (Alu)

C2orf27A

Intron

2

chr2:137 502 221

304

SINE (Alu)

THSD7B

Intron

2

chr2:141 356 579

332

SINE (Alu)

LRP1B

Intron

2

chr2:147 892 493

298

SINE (Alu)

ACVR2A

Intron

2

chr2:149 907 736

327

SINE (Alu)

MMADHC-DT

Intron

2

chr2:152 391 750

325

SINE (Alu)

FMNL2

Intron

2

chr2:159 251 110

156

SINE (Alu)

WDSUB1

Intron

2

chr2:159 519 808

159

SINE (Alu)

BAZ2B

Intron

2

chr2:162 822 105

310

SINE (Alu)

KCNH7

Intron

2

chr2:171 866 626

421

Retroposon (SVA)

SLC25A12

Intron

2

chr2:174 871 203

318

SINE (Alu)

CHN1

Intron

2

chr2:177 453 984

332

SINE (Alu)

AGPS

Intron

2

chr2:177 486 725

339

SINE (Alu)

AGPS

Intron

2

chr2:181 016 002

310

SINE (Alu)

UBE2E3

Intron

2

chr2:181 397 456

307

SINE (Alu)

LINC01934

Intron

2

chr2:184 896 828

322

SINE (Alu)

ZNF804A

Intron

2

chr2:188 298 290

297

SINE (Alu)

GULP1

Intron

2

chr2:189 094 694

310

SINE (Alu)

COL5A2

Intron

2

chr2:190 430 798

95

Retroposon (SVA)

MFSD6

Intron

1

chr2:191 398 198

300

Retroposon (SVA)

MYO1B

Intron

2

chr2:192 131 159

114

LTR (ERV1)

TMEFF2

Intron

1

chr2:197 922 671

126

Retroposon (SVA)

PLCL1

Intron

1

chr2:200 773 343

968

LINE (L1)

AOX3P-AOX2P

Intron

2

chr2:201 766 720

319

SINE (Alu)

ALS2

Intron

2

chr2:201 777 260

325

SINE (Alu)

ALS2

Intron

2

chr2:207 112 163

322

SINE (Alu)

KLF7

Intron

2

chr2:207 607 676

315

SINE (Alu)

METTL21A

Intron

2

chr2:212 060 586

323

SINE (Alu)

ERBB4

Intron

2

chr2:213 112 341

342

SINE (Alu)

IKZF2

Intron

2

chr2:214 336 906

323

SINE (Alu)

SPAG16

Intron

2

chr2:214 835 480

426

Retroposon (SVA)

SNHG31

Intron

1

chr2:215 683 694

326

SINE (Alu)

LOC102724861

Intron

2

chr2:217 316 033

319

SINE (Alu)

DIRC3-AS1

Intron

2

chr2:217 400 356

318

SINE (Alu)

DIRC3

Intron

2

chr2:218 711 869

326

SINE (Alu)

TTLL4

Intron

2

chr2:228 665 921

50

LINE (L1)

LINC01807

Intron

2

chr2:232 246 907

127

LINE (L1)

DIS3L2

Intron

2

chr2:232 981 165

310

SINE (Alu)

NGEF

Intron

2

chr2:233 724 125

50

Retroposon (SVA)

UGT1A8

Intron

2

chr3:2 129 412

333

SINE (Alu)

CNTN4

Intron

2

chr3:2 772 339

327

SINE (Alu)

CNTN4

Intron

2

chr3:2 920 309

317

SINE (Alu)

CNTN4

Intron

2

chr3:4 163 465

316

SINE (Alu)

SUMF1

Intron

2

chr3:7 088 685

326

SINE (Alu)

GRM7

Intron

2

chr3:7 091 700

330

SINE (Alu)

GRM7

Intron

2

chr3:7 128 489

309

SINE (Alu)

GRM7

Intron

2

chr3:8 440 233

331

Retroposon (SVA)

LOC101927394

Intron

2

chr3:8 440 261

76

Retroposon (SVA)

LOC101927394

Intron

2

chr3:10 070 475

212

Retroposon (SVA)

FANCD2

Intron

2

chr3:10 241 289

146

SINE (Alu)

IRAK2

Intron

2

chr3:11 487 506

529

Retroposon (SVA)

ATG7

Intron

2

chr3:11 487 563

825

Retroposon (SVA)

ATG7

Intron

2

chr3:12 095 544

323

SINE (Alu)

SYN2

Intron

2

chr3:15 742 687

749

Retroposon (SVA)

ANKRD28

Intron

2

chr3:16 980 137

740

Retroposon (SVA)

PLCL2

Intron

2

chr3:25 236 955

323

SINE (Alu)

RARB

Intron

2

chr3:25 249 849

71

LINE (L1)

RARB

Intron

2

chr3:28 798 671

330

SINE (Alu)

ZCWPW2

Intron

2

chr3:29 472 992

49

LTR (ERV1)

ZCWPW2

Intron

2

chr3:29 473 150

159

LTR (ERV1)

ZCWPW2

Intron

2

chr3:31 839 889

326

SINE (Alu)

OSBPL10

Intron

2

chr3:32 002 688

94

LTR (ERV1)

OSBPL10

Intron

2

chr3:32 397 295

251

SINE (Alu)

CMTM7

Intron

2

chr3:37 562 939

320

SINE (Alu)

ITGA9

Intron

2

chr3:37 879 053

341

SINE (Alu)

CTDSPL

Intron

2

chr3:38 358 205

289

SINE (Alu)

XYLB

Intron

2

chr3:40 200 116

321

SINE (Alu)

MYRIP

Intron

2

chr3:41 306 196

61

Retroposon (SVA)

ULK4

Intron

2

chr3:44 298 799

306

SINE (Alu)

TOPAZ1

Intron

2

chr3:45 501 159

317

SINE (Alu)

LARS2

Intron

2

chr3:45 650 999

329

SINE (Alu)

LIMD1

Intron

2

chr3:46 494 947

323

Retroposon (SVA)

RTP3

Intron

2

chr3:46 620 351

321

SINE (Alu)

FAM240A

Intron

2

chr3:47 741 368

318

SINE (Alu)

SMARCC1

Intron

2

chr3:48 330 822

324

SINE (Alu)

SPINK8

Intron

2

chr3:48 708 596

324

SINE (Alu)

IP6K2

Intron

2

chr3:50 025 589

268

SINE (Alu)

RBM6

Intron

2

chr3:50 084 780

77

Retroposon (SVA)

RBM6

Intron

2

chr3:50 841 727

344

SINE (Alu)

DOCK3

Intron

2

chr3:51 249 675

126

Retroposon (SVA)

DOCK3

Intron

2

chr3:53 465 970

334

SINE (Alu)

CACNA1D

Intron

2

chr3:56 584 270

79

Retroposon (SVA)

CCDC66

Intron

2

chr3:57 448 751

487

LTR (ERV1)

DNAH12

Intron

2

chr3:57 578 464

310

SINE (Alu)

ARF4

Intron

2

chr3:59 908 834

108

SINE (Alu)

FHIT

Intron

2

chr3:61 671 741

281

Retroposon (SVA)

PTPRG

Intron

1

chr3:61 671 741

177

Retroposon (SVA)

PTPRG

Intron

1

chr3:63 555 273

312

SINE (Alu)

SYNPR

Intron

2

chr3:79 619 091

52

LTR (ERV1)

ROBO1

Intron

2

chr3:79 762 475

330

SINE (Alu)

ROBO1

Intron

2

chr3:85 527 417

6 052

LINE (L1)

CADM2

Intron

2

chr3:88 428 991

287

SINE (Alu)

CSNKA2IP

Intron

2

chr3:98 836 816

77

Retroposon (SVA)

DCBLD2

Intron

2

chr3:99 007 919

312

SINE (Alu)

LOC105374002

Intron

2

chr3:99 936 539

324

SINE (Alu)

CMSS1

Intron

2

chr3:100 691 697

327

SINE (Alu)

ADGRG7

Intron

2

chr3:101 439 979

731

Retroposon (SVA)

SENP7

Intron

2

chr3:107 287 946

315

SINE (Alu)

DUBR

Intron

2

chr3:111 507 514

335

SINE (Alu)

LOC105374039

Intron

2

chr3:112 205 623

49

LINE (L1)

SLC9C1

Intron

2

chr3:115 664 229

329

SINE (Alu)

GAP43

Intron

2

chr3:119 025 405

319

SINE (Alu)

IGSF11

Intron

2

chr3:121 849 956

314

SINE (Alu)

EAF2

Intron

2

chr3:123 080 894

326

SINE (Alu)

PDIA5

Intron

2

chr3:123 407 764

310

SINE (Alu)

ADCY5

Intron

2

chr3:123 871 864

6 047

LINE (L1)

MYLK

Intron

2

chr3:124 687 657

316

SINE (Alu)

KALRN

Intron

2

chr3:124 922 699

134

SINE (Alu)

MUC13

Intron

2

chr3:128 676 362

314

SINE (Alu)

RPN1

Intron

2

chr3:128 955 332

177

Retroposon (SVA)

CFAP92

Intron

1

chr3:130 090 880

300

SINE (Alu)

ALG1L2

Intron

1

chr3:130 219 573

317

SINE (Alu)

COL6A4P2

Intron

2

chr3:136 893 195

105

LINE (L1)

NCK1

Intron

2

chr3:142 741 180

314

SINE (Alu)

TRPC1

Intron

2

chr3:149 380 188

682

Retroposon (SVA)

TM4SF1-AS1

Intron

2

chr3:149 380 313

1 377

Retroposon (SVA)

TM4SF1-AS1

Intron

2

chr3:150 820 821

146

Retroposon (SVA)

SIAH2-AS1

Intron

2

chr3:151 820 689

171

SINE (Alu)

AADAC

Intron

2

chr3:155 668 083

178

SINE (Alu)

PLCH1

Intron

2

chr3:156 100 578

337

SINE (Alu)

KCNAB1

Intron

2

chr3:157 436 295

323

SINE (Alu)

PTX3

Promoter

2

chr3:157 436 295

323

SINE (Alu)

VEPH1

Intron

2

chr3:158 245 130

339

SINE (Alu)

RSRC1

Intron

2

chr3:160 546 055

161

SINE (Alu)

KPNA4

Intron

2

chr3:168 481 273

319

SINE (Alu)

EGFEM1P

Intron

2

chr3:171 908 582

313

SINE (Alu)

TMEM212

Intron

2

chr3:174 692 945

322

SINE (Alu)

NAALADL2

Intron

2

chr3:178 393 247

333

SINE (Alu)

KCNMB2

Intron

2

chr3:179 121 485

67

Retroposon (SVA)

PIK3CA-DT

Intron

2

chr3:181 475 037

3 202

LINE (L1)

SOX2-OT

Intron

2

chr3:182 153 132

129

LINE (L1)

LOC105374243

Intron

2

chr3:183 870 209

304

SINE (Alu)

MAP6D1

Intron

2

chr3:186 654 333

6 051

LINE (L1)

HRG-AS1

Intron

2

chr3:187 240 158

329

SINE (Alu)

MASP1

Intron

2

chr3:191 281 660

322

SINE (Alu)

UTS2B

Intron

2

chr3:191 390 410

77

LTR (ERV1)

CCDC50

Intron

2

chr3:196 874 212

322

SINE (Alu)

SENP5

Intron

2

chr4:1 308 027

318

SINE (Alu)

MAEA

Intron

2

chr4:2 570 071

317

SINE (Alu)

FAM193A

Intron

2

chr4:4 349 007

65

LTR (ERV1)

NSG1

Intron

2

chr4:4 357 809

133

LINE (L1)

NSG1

Intron

2

chr4:9 449 339

137

LINE (L1)

DEFB131A

Intron

2

chr4:12 237 653

133

SINE (Alu)

LINC02270

Intron

2

chr4:13 761 218

146

Retroposon (SVA)

LOC107986182

Intron

2

chr4:14 955 276

114

LTR (ERVL)

CPEB2-DT

Intron

2

chr4:15 615 472

237

LTR (ERV1)

FBXL5

Intron

2

chr4:19 364 519

324

SINE (Alu)

LINC02438

Intron

2

chr4:25 808 835

135

SINE (Alu)

SEL1L3

Intron

2

chr4:36 323 570

314

SINE (Alu)

DTHD1

Intron

2

chr4:39 408 924

322

SINE (Alu)

KLB

Intron

2

chr4:40 879 175

322

SINE (Alu)

APBB2

Intron

2

chr4:41 049 360

133

Retroposon (SVA)

APBB2

Intron

2

chr4:42 086 022

315

SINE (Alu)

SLC30A9

Intron

2

chr4:47 005 771

423

LINE (L1)

GABRB1

Intron

2

chr4:52 081 945

147

LINE (CR1)

SPATA18

Intron

2

chr4:52 737 160

168

SINE (Alu)

RASL11B

Intron

2

chr4:53 549 475

320

SINE (Alu)

PDGFRA

Intron

2

chr4:54 154 775

159

LTR (ERV1)

PDGFRA

Intron

2

chr4:55 505 776

318

SINE (Alu)

CLOCK

Intron

2

chr4:64 351 027

290

SINE (Alu)

TECRL

Intron

2

chr4:68 079 050

325

SINE (Alu)

UBA6-DT

Intron

2

chr4:69 611 287

310

SINE (Alu)

UGT2A2

Intron

2

chr4:69 762 349

175

Retroposon (SVA)

SULT1B1

Intron

2

chr4:72 104 993

318

SINE (Alu)

NPFFR2

Intron

2

chr4:75 861 612

314

SINE (Alu)

PPEF2

Intron

2

chr4:76 072 654

316

SINE (Alu)

ART3

Intron

2

chr4:76 496 764

2 059

Retroposon (SVA)

SHROOM3

Intron

2

chr4:78 238 350

318

SINE (Alu)

FRAS1

Intron

2

chr4:78 401 811

325

SINE (Alu)

FRAS1

Intron

2

chr4:81 708 982

318

SINE (Alu)

RASGEF1B

Intron

2

chr4:85 549 216

314

SINE (Alu)

ARHGAP24

Intron

2

chr4:85 663 335

318

SINE (Alu)

ARHGAP24

Intron

2

chr4:86 021 227

160

LTR (ERV1)

MAPK10

Intron

2

chr4:87 308 501

144

SINE (Alu)

HSD17B13

Intron

2

chr4:89 042 102

214

SINE (Alu)

FAM13A

Intron

2

chr4:91 168 070

150

Retroposon (SVA)

CCSER1

Intron

1

chr4:92 442 128

325

SINE (Alu)

GRID2

Intron

2

chr4:94 492 114

324

SINE (Alu)

PDLIM5

Intron

2

chr4:101 120 577

322

SINE (Alu)

PPP3CA

Intron

2

chr4:102 422 587

1 888

LINE (L1)

SLC39A8

Intron

2

chr4:109 597 355

194

Retroposon (SVA)

MCUB

Intron

2

chr4:113 097 092

312

SINE (Alu)

ANK2

Intron

2

chr4:114 628 766

319

SINE (Alu)

UGT8

Intron

2

chr4:123 709 543

129

LINE (L1)

LINC01091

Intron

2

chr4:126 675 052

476

LINE (L1)

LOC105377411

Intron

2

chr4:128 286 079

326

SINE (Alu)

PGRMC2

Intron

2

chr4:134 214 179

412

LTR (ERVL)

PABPC4L

Intron

2

chr4:136 885 360

137

SINE (Alu)

LINC02511

Intron

2

chr4:138 304 044

331

SINE (Alu)

LINC00498

Intron

2

chr4:139 289 130

294

SINE (Alu)

MGARP

Intron

2

chr4:140 017 765

151

SINE (Alu)

MAML3

Intron

2

chr4:145 892 669

318

SINE (Alu)

ZNF827

Promoter

2

chr4:145 892 669

318

SINE (Alu)

ZNF827

Intron

2

chr4:146 304 128

6 041

LINE (L1)

SLC10A7

Intron

2

chr4:147 132 785

324

SINE (Alu)

LOC105377476

Intron

2

chr4:149 818 787

323

SINE (Alu)

IQCM

Intron

2

chr4:150 372 749

318

SINE (Alu)

LRBA

Intron

2

chr4:150 660 232

98

Retroposon (SVA)

LRBA

Intron

2

chr4:150 953 967

79

Retroposon (SVA)

LRBA

Intron

2

chr4:151 214 794

126

Retroposon (SVA)

SH3D19

Intron

2

chr4:153 979 895

322

SINE (Alu)

LOC101927947

Intron

2

chr4:163 836 593

223

SINE (Alu)

MARCHF1

Intron

2

chr4:164 310 574

364

LINE (L1)

MARCHF1

Intron

2

chr4:165 269 620

326

SINE (Alu)

KLHL2

Intron

2

chr4:169 913 439

300

SINE (Alu)

LOC105377530

Intron

2

chr4:173 123 062

319

SINE (Alu)

GALNT7-DT

Intron

2

chr4:173 228 288

316

SINE (Alu)

GALNT7

Intron

2

chr4:173 865 543

317

SINE (Alu)

LINC02269

Intron

2

chr4:181 070 771

321

SINE (Alu)

LINC00290

Intron

2

chr4:185 056 645

309

SINE (Alu)

LINC02436

Intron

2

chr4:185 440 757

304

SINE (Alu)

C4orf47

Intron

2

chr4:186 491 744

54

SINE (Alu)

F11-AS1

Intron

2

chr5:1 812 525

312

SINE (Alu)

NDUFS6

Intron

2

chr5:7 845 925

312

SINE (Alu)

C5orf49

Intron

2

chr5:10 634 867

319

SINE (Alu)

ANKRD33B

Intron

2

chr5:11 162 726

323

SINE (Alu)

CTNND2

Intron

2

chr5:13 827 484

618

LTR (ERVL)

DNAH5

Intron

2

chr5:16 716 503

310

SINE (Alu)

MYO10

Intron

2

chr5:20 471 978

280

LINE (L2)

CDH18

Intron

2

chr5:20 834 954

244

LINE (L1)

LINC02241

Intron

2

chr5:25 233 803

294

SINE (Alu)

LINC02211

Intron

2

chr5:32 762 455

329

SINE (Alu)

NPR3

Intron

2

chr5:32 974 396

1 060

LINE (L1)

LOC105374715

Intron

2

chr5:33 633 228

5 228

LINE (L1)

ADAMTS12

Intron

2

chr5:33 797 437

6 058

LINE (L1)

ADAMTS12

Intron

2

chr5:34 113 145

320

SINE (Alu)

C1QTNF3-AMACR

Intron

2

chr5:37 688 692

281

SINE (Alu)

WDR70

Intron

2

chr5:39 292 866

335

SINE (Alu)

C9

Intron

2

chr5:39 334 533

77

Retroposon (SVA)

C9

Intron

2

chr5:54 087 760

65

SINE (Alu)

ARL15

Intron

2

chr5:55 433 459

340

SINE (Alu)

PLPP1

Intron

2

chr5:55 695 934

98

Retroposon (SVA)

SLC38A9

Intron

2

chr5:55 871 816

328

SINE (Alu)

IL31RA

Intron

2

chr5:62 339 522

316

SINE (Alu)

KIF2A

Intron

2

chr5:62 561 274

324

SINE (Alu)

IPO11

Intron

2

chr5:65 940 643

49

Retroposon (SVA)

ERBIN

Intron

2

chr5:68 967 632

650

LINE (L1)

LOC107984116

Intron

2

chr5:69 515 538

97

Retroposon (SVA)

OCLN

Intron

2

chr5:76 172 419

101

Retroposon (SVA)

SV2C

Intron

2

chr5:76 974 446

295

SINE (Alu)

CRHBP

Intron

2

chr5:77 395 389

313

SINE (Alu)

PDE8B

Intron

2

chr5:77 457 767

325

SINE (Alu)

WDR41

Intron

2

chr5:77 794 945

123

Retroposon (SVA)

TBCA

Intron

2

chr5:79 147 046

300

SINE (Alu)

DMGDH

Intron

2

chr5:82 140 242

223

Retroposon (SVA)

ATG10

Intron

2

chr5:87 076 864

294

SINE (Alu)

LOC101929380

Intron

2

chr5:90 154 950

6 070

LINE (L1)

LINC01339

Intron

2

chr5:90 702 006

153

SINE (Alu)

ADGRV1

Intron

2

chr5:95 658 504

323

SINE (Alu)

LOC105379090

Intron

2

chr5:104 113 189

49

SINE (Alu)

NIHCOLE

Intron

2

chr5:104 402 721

291

SINE (Alu)

NIHCOLE

Intron

2

chr5:109 282 197

167

LINE (L1)

LOC285638

Intron

2

chr5:111 450 624

186

SINE (Alu)

CAMK4

Intron

2

chr5:115 404 024

289

SINE (Alu)

LOC105379130

Intron

2

chr5:117 973 461

178

LTR (ERVL)

LINC02147

Intron

2

chr5:131 517 547

328

SINE (Alu)

RAPGEF6

Intron

2

chr5:137 059 137

234

LINE (L2)

SPOCK1

Intron

2

chr5:140 215 541

327

SINE (Alu)

CYSTM1

Intron

2

chr5:142 379 076

313

SINE (Alu)

SPRY4-AS1

Intron

2

chr5:146 990 048

317

SINE (Alu)

PPP2R2B

Intron

2

chr5:147 258 151

294

SINE (Alu)

STK32A

Intron

2

chr5:155 906 881

2 494

LINE (L1)

SGCD

Intron

2

chr5:157 139 715

333

SINE (Alu)

HAVCR2

Intron

2

chr5:158 376 055

254

SINE (Alu)

LINC02227

Intron

2

chr5:159 695 129

316

SINE (Alu)

LOC105377684

Intron

2

chr5:162 530 740

5 478

LINE (L1)

LOC105377697

Intron

2

chr5:167 748 593

321

SINE (Alu)

TENM2

Intron

2

chr5:170 774 320

310

SINE (Alu)

GABRP

Intron

2

chr5:173 116 811

118

LINE (L1)

CREBRF

Intron

1

chr5:176 305 313

479

Retroposon (SVA)

SIMC1

Intron

2

chr5:176 306 174

50

Retroposon (SVA)

SIMC1

Intron

2

chr5:177 025 394

330

SINE (Alu)

ZNF346

Intron

2

chr5:177 635 730

1 229

LINE (L1)

LOC202181

Intron

2

chr5:177 736 083

170

SINE (Alu)

FAM153A

Intron

2

chr5:178 458 165

63

LINE (L1)

COL23A1

Intron

2

chr5:179 942 167

147

SINE (Alu)

RNF130

Intron

2

chr5:180 922 590

321

SINE (Alu)

BTNL8

Intron

2

chr5:180 941 894

122

SINE (Alu)

BTNL8

Intron

2

chr6:2 773 768

292

SINE (Alu)

WRNIP1

Intron

2

chr6:2 972 359

305

SINE (Alu)

SERPINB6

Promoter

2

chr6:13 190 782

6 055

LINE (L1)

PHACTR1

Intron

2

chr6:15 415 597

48

Retroposon (SVA)

JARID2

Intron

1

chr6:15 415 618

50

Retroposon (SVA)

JARID2

Intron

1

chr6:16 417 452

157

LINE (L1)

ATXN1

Intron

2

chr6:17 416 151

320

SINE (Alu)

CAP2

Intron

2

chr6:19 346 203

318

SINE (Alu)

LOC107986575

Intron

2

chr6:20 168 888

314

SINE (Alu)

MBOAT1

Intron

2

chr6:20 887 674

314

SINE (Alu)

CDKAL1

Intron

2

chr6:27 484 973

87

Retroposon (SVA)

LOC105375001

Intron

1

chr6:27 485 004

431

Retroposon (SVA)

LOC105375001

Intron

1

chr6:29 731 770

2 300

Retroposon (SVA)

HLA-F

Intron

2

chr6:29 977 733

316

SINE (Alu)

HCG9

Intron

2

chr6:29 986 044

327

SINE (Alu)

POLR1HASP

Intron

2

chr6:30 786 922

310

SINE (Alu)

HCG20

Intron

2

chr6:30 815 374

100

LTR (ERV1)

LINC00243

Intron

2

chr6:31 013 127

315

SINE (Alu)

MUC22

Intron

2

chr6:31 409 512

84

LINE (L1)

MICA

Intron

2

chr6:32 528 617

311

SINE (Alu)

HLA-DRB5

Intron

1

chr6:34 398 183

177

Retroposon (SVA)

NUDT3

Intron

2

chr6:36 363 389

101

LTR (ERV1)

ETV7

Intron

2

chr6:38 964 348

345

Retroposon (SVA)

DNAH8

Intron

2

chr6:42 702 567

315

SINE (Alu)

PRPH2

Intron

2

chr6:43 927 736

317

SINE (Alu)

LINC01512

Intron

2

chr6:44 319 523

608

LINE (L2)

SPATS1

Intron

2

chr6:47 505 626

805

Retroposon (SVA)

CD2AP

Intron

2

chr6:49 487 167

101

LINE (L1)

CENPQ

Intron

2

chr6:51 982 181

991

Retroposon (SVA)

PKHD1

Intron

2

chr6:54 849 738

324

SINE (Alu)

FAM83B

Intron

2

chr6:64 312 982

307

LINE (L1)

EYS

Intron

1

chr6:65 454 072

309

SINE (Alu)

EYS

Intron

2

chr6:68 932 875

326

SINE (Alu)

ADGRB3

Intron

2

chr6:69 061 778

55

LINE (L1)

ADGRB3

Intron

2

chr6:69 122 017

76

Retroposon (SVA)

ADGRB3

Intron

2

chr6:73 601 480

273

Retroposon (SVA)

SLC17A5

Intron

2

chr6:73 632 007

338

SINE (Alu)

SLC17A5

Intron

2

chr6:73 795 113

327

SINE (Alu)

CD109

Intron

2

chr6:74 628 503

326

SINE (Alu)

LOC101928516

Intron

2

chr6:77 654 536

303

SINE (Alu)

MEI4

Intron

2

chr6:81 587 704

322

SINE (Alu)

LOC105377871

Intron

2

chr6:88 947 722

129

Retroposon (SVA)

RNGTT

Intron

1

chr6:96 061 288

321

SINE (Alu)

FUT9

Intron

2

chr6:96 193 217

1 014

LINE (L1)

FUT9

Intron

2

chr6:96 497 728

68

LINE (L1)

UFL1-AS1

Intron

2

chr6:97 803 451

305

SINE (Alu)

LOC101927314

Intron

2

chr6:101 835 881

1 270

LINE (L1)

GRIK2

Intron

2

chr6:107 078 566

136

SINE (Alu)

BEND3

Intron

2

chr6:109 047 040

677

Retroposon (SVA)

SESN1

Intron

2

chr6:109 047 060

315

Retroposon (SVA)

SESN1

Intron

1

chr6:109 047 311

273

Retroposon (SVA)

SESN1

Intron

1

chr6:110 473 738

308

SINE (Alu)

SLC22A16

Intron

2

chr6:114 227 232

317

SINE (Alu)

HDAC2-AS2

Intron

2

chr6:114 921 893

74

LINE (L1)

LOC107986639

Intron

2

chr6:115 985 916

290

SINE (Alu)

FRK

Intron

2

chr6:117 434 720

320

SINE (Alu)

GOPC

Intron

2

chr6:117 477 503

110

LTR (ERV1)

DCBLD1

Intron

2

chr6:122 658 846

321

SINE (Alu)

PKIB

Intron

2

chr6:126 102 518

314

SINE (Alu)

TRMT11

Intron

2

chr6:130 293 637

291

SINE (Alu)

SAMD3

Intron

2

chr6:130 854 322

316

SINE (Alu)

EPB41L2

Intron

2

chr6:133 410 619

179

SINE (Alu)

EYA4

Intron

2

chr6:136 151 778

71

SINE (Alu)

PDE7B

Intron

2

chr6:142 128 962

6 032

LINE (L1)

NMBR

Intron

2

chr6:143 630 226

312

SINE (Alu)

PHACTR2

Intron

2

chr6:147 874 651

2 645

LINE (L1)

SAMD5

Intron

2

chr6:148 481 014

283

SINE (Alu)

SASH1

Intron

2

chr6:155 117 106

328

SINE (Alu)

TIAM2

Intron

2

chr6:155 996 968

305

SINE (Alu)

LOC101928923

Intron

2

chr6:157 076 539

328

SINE (Alu)

ARID1B

Intron

2

chr6:158 239 907

403

Retroposon (SVA)

TULP4

Intron

1

chr6:158 349 074

263

Retroposon (SVA)

TULP4

Intron

2

chr6:158 745 252

318

SINE (Alu)

SYTL3

Intron

2

chr6:158 783 393

325

SINE (Alu)

EZR

Intron

2

chr6:160 915 407

315

SINE (Alu)

LOC105378093

Intron

2

chr6:161 760 223

4 012

LINE (L1)

PRKN

Intron

2

chr6:163 046 353

327

SINE (Alu)

PACRG

Intron

2

chr6:165 866 403

332

SINE (Alu)

PDE10A

Intron

2

chr6:166 711 308

318

SINE (Alu)

RPS6KA2

Intron

2

chr6:168 588 126

325

SINE (Alu)

SMOC2

Intron

2

chr6:170 185 527

331

SINE (Alu)

LOC154449

Intron

2

chr7:2 268 713

128

Retroposon (SVA)

SNX8

Intron

1

chr7:8 495 321

327

SINE (Alu)

NXPH1

Intron

2

chr7:10 465 264

353

Retroposon (SVA)

MGC4859

Intron

2

chr7:10 465 325

226

Retroposon (SVA)

MGC4859

Intron

2

chr7:15 423 543

134

LTR (ERVL)

AGMO

Intron

2

chr7:18 233 451

328

SINE (Alu)

HDAC9

Intron

2

chr7:18 282 964

280

SINE (Alu)

HDAC9

Intron

2

chr7:19 478 703

4 750

LINE (L1)

LOC105375180

Intron

2

chr7:20 668 937

1 029

Retroposon (SVA)

ABCB5

Intron

2

chr7:22 813 858

315

SINE (Alu)

TOMM7

Intron

2

chr7:26 168 425

119

LINE (L1)

NFE2L3

Intron

2

chr7:29 145 538

327

SINE (Alu)

CHN2

Intron

2

chr7:31 761 097

81

SINE (MIR)

PDE1C

Intron

2

chr7:36 212 541

319

SINE (Alu)

EEPD1

Intron

2

chr7:37 292 777

120

Retroposon (SVA)

ELMO1

Intron

2

chr7:37 797 033

310

SINE (Alu)

GPR141

Intron

2

chr7:64 809 491

125

Retroposon (SVA)

ZNF138

Intron

2

chr7:67 126 181

6 044

LINE (L1)

TYW1

Intron

2

chr7:67 145 044

319

SINE (Alu)

TYW1

Intron

2

chr7:69 293 439

331

SINE (Alu)

LOC105375345

Intron

2

chr7:78 107 874

322

SINE (Alu)

MAGI2

Intron

2

chr7:78 517 185

328

SINE (Alu)

MAGI2

Intron

2

chr7:79 976 821

69

LTR (ERV1)

GNAI1

Intron

2

chr7:80 793 843

332

SINE (Alu)

SEMA3C

Intron

2

chr7:82 801 191

316

SINE (Alu)

PCLO

Intron

2

chr7:83 460 625

63

LTR (ERV1)

SEMA3E

Intron

2

chr7:84 299 804

69

SINE (Alu)

SEMA3A

Intron

2

chr7:85 113 607

306

SINE (Alu)

SEMA3D

Intron

2

chr7:88 751 024

314

SINE (Alu)

LOC107986816

Intron

2

chr7:92 122 219

316

SINE (Alu)

CYP51A1

Intron

2

chr7:95 149 737

326

SINE (Alu)

PPP1R9A

Intron

2

chr7:95 248 185

281

SINE (Alu)

PPP1R9A

Intron

2

chr7:100 948 850

52

SINE (Alu)

MUC3A

Promoter

1

chr7:100 948 850

52

SINE (Alu)

MUC3A

Promoter

1

chr7:100 973 081

331

SINE (Alu)

MUC12

Intron

2

chr7:102 549 902

83

SINE (Alu)

POLR2J3-UPK3BL2

Intron

1

chr7:105 255 127

324

SINE (Alu)

SRPK2

Intron

2

chr7:105 924 008

312

SINE (Alu)

CDHR3

Intron

2

chr7:108 188 803

6 062

LINE (L1)

NRCAM

Intron

2

chr7:110 844 692

97

LINE (L1)

IMMP2L

Intron

2

chr7:118 443 246

317

SINE (Alu)

ANKRD7

Intron

2

chr7:119 619 753

312

SINE (Alu)

LINC02476

Intron

2

chr7:122 469 788

326

SINE (Alu)

CADPS2

Intron

2

chr7:122 733 485

329

SINE (Alu)

CADPS2

Intron

2

chr7:123 455 107

6 076

LINE (L1)

IQUB

Intron

2

chr7:124 141 305

281

SINE (Alu)

LOC102724577

Intron

2

chr7:124 952 959

320

SINE (Alu)

POT1-AS1

Intron

2

chr7:125 022 558

167

LTR (ERVL)

POT1-AS1

Intron

2

chr7:127 761 411

320

SINE (Alu)

SND1

Intron

2

chr7:128 569 092

242

SINE (Alu)

LINC01000

Intron

2

chr7:129 476 156

91

Retroposon (SVA)

STRIP2

Intron

2

chr7:129 642 755

319

SINE (Alu)

NRF1

Intron

2

chr7:130 591 386

627

Retroposon (SVA)

COPG2

Intron

2

chr7:133 896 830

176

SINE (Alu)

EXOC4

Intron

2

chr7:138 789 840

173

SINE (Alu)

ATP6V0A4

Intron

2

chr7:139 101 477

364

Retroposon (SVA)

ZC3HAV1

Intron

2

chr7:140 362 567

222

Retroposon (SVA)

SLC37A3

Intron

2

chr7:142 048 504

86

SINE (Alu)

MGAM

Intron

2

chr7:142 823 654

95

LINE (L1)

LOC105375541

Intron

2

chr7:146 390 925

68

SINE (Alu)

CNTNAP2

Intron

2

chr7:149 554 812

49

Retroposon (SVA)

ZNF767P

Intron

2

chr7:150 342 492

54

SINE (MIR)

RARRES2

Promoter

2

chr7:157 558 082

339

SINE (Alu)

PTPRN2

Intron

2

chr7:157 656 079

316

SINE (Alu)

PTPRN2

Intron

2

chr7:902 456

174

SINE (Alu)

ADAP1

Intron

2

chr8:3 769 437

329

SINE (Alu)

CSMD1

Intron

2

chr8:6 187 437

317

SINE (Alu)

LOC105377797

Intron

2

chr8:6 196 793

91

LINE (L1)

LOC105377797

Intron

2

chr8:9 062 603

322

SINE (Alu)

ERI1

Intron

2

chr8:9 606 142

311

SINE (Alu)

TNKS

Intron

2

chr8:12 641 514

328

SINE (Alu)

LOC729732

Intron

2

chr8:13 099 050

315

SINE (Alu)

DLC1

Intron

2

chr8:15 041 743

156

SINE (Alu)

SGCZ

Intron

2

chr8:15 119 558

222

SINE (Alu)

SGCZ

Intron

2

chr8:16 245 296

275

SINE (Alu)

MSR1

Intron

2

chr8:16 674 061

847

LINE (L1)

LOC101929028

Intron

2

chr8:18 759 951

332

SINE (Alu)

PSD3

Intron

2

chr8:22 625 878

330

SINE (Alu)

BIN3

Intron

2

chr8:22 922 448

348

SINE (Alu)

PEBP4

Intron

2

chr8:25 315 133

309

SINE (Alu)

DOCK5

Intron

2

chr8:28 684 943

129

LINE (L1)

EXTL3

Intron

2

chr8:31 383 933

335

SINE (Alu)

LOC101929492

Intron

2

chr8:32 502 454

313

SINE (Alu)

NRG1

Intron

2

chr8:32 514 935

198

LINE (L1)

NRG1

Intron

2

chr8:33 904 132

284

SINE (Alu)

LOC105379364

Intron

2

chr8:39 006 540

314

SINE (Alu)

ADAM9

Promoter

2

chr8:39 006 540

314

SINE (Alu)

ADAM9

Intron

2

chr8:41 299 576

135

SINE (Alu)

SFRP1

Intron

2

chr8:42 182 377

311

SINE (Alu)

PLAT

Intron

2

chr8:43 179 665

98

Retroposon (SVA)

HGSNAT

Promoter

2

chr8:43 179 665

98

Retroposon (SVA)

HGSNAT

Intron

2

chr8:60 614 219

324

SINE (Alu)

RAB2A

Intron

2

chr8:64 686 420

77

Retroposon (SVA)

CYP7B1

Intron

2

chr8:65 662 664

72

Retroposon (SVA)

MTFR1

Intron

2

chr8:66 469 644

231

LINE (L1)

VXN

Intron

2

chr8:71 002 341

333

SINE (Alu)

LOC105375894

Intron

2

chr8:71 293 805

323

SINE (Alu)

EYA1

Intron

2

chr8:73 371 133

327

SINE (Alu)

LOC105375899

Promoter

2

chr8:74 463 097

318

SINE (Alu)

GDAP1

Intron

2

chr8:79 838 639

319

SINE (Alu)

LOC101927040

Intron

2

chr8:80 855 344

314

SINE (Alu)

ZNF704

Intron

2

chr8:82 289 319

326

SINE (Alu)

LOC105375931

Intron

2

chr8:84 525 028

308

SINE (Alu)

RALYL

Intron

2

chr8:86 067 390

320

SINE (Alu)

PSKH2

Intron

2

chr8:86 302 813

115

LINE (L1)

SLC7A13

Intron

2

chr8:86 694 070

98

Retroposon (SVA)

CNGB3

Promoter

2

chr8:86 694 070

98

Retroposon (SVA)

CNGB3

Intron

2

chr8:86 964 152

73

LTR (ERV1)

CNBD1

Intron

2

chr8:90 375 561

109

LTR (ERVL)

LINC00534

Intron

2

chr8:90 685 715

843

LTR (ERVK)

LOC105375633

Intron

1

chr8:90 686 770

517

LTR (ERV1)

LOC105375633

Intron

2

chr8:94 491 158

168

SINE (Alu)

VIRMA

Promoter

2

chr8:94 491 158

168

SINE (Alu)

VIRMA

Intron

2

chr8:95 455 549

314

SINE (Alu)

CFAP418-AS1

Intron

2

chr8:95 771 303

320

SINE (Alu)

CFAP418-AS1

Intron

2

chr8:109 089 362

322

SINE (Alu)

TRHR

Intron

2

chr8:116 034 779

275

SINE (Alu)

LINC00536

Intron

2

chr8:124 877 714

283

SINE (Alu)

LINC00964

Intron

2

chr8:125 327 685

353

SINE (Alu)

NSMCE2

Intron

2

chr8:126 853 220

290

SINE (Alu)

LOC105375751

Intron

2

chr8:127 025 866

325

SINE (Alu)

LOC105375751

Intron

2

chr8:128 695 771

321

SINE (Alu)

LINC00976

Intron

2

chr8:128 825 941

179

Retroposon (SVA)

LINC00976

Intron

1

chr8:128 826 105

401

Retroposon (SVA)

LINC00976

Intron

2

chr8:129 258 242

278

SINE (Alu)

CCDC26

Intron

2

chr8:138 044 826

318

SINE (Alu)

LOC401478

Intron

2

chr8:138 313 721

313

SINE (Alu)

FAM135B

Intron

2

chr8:140 037 950

328

SINE (Alu)

TRAPPC9

Intron

2

chr8:140 950 042

69

LTR (ERV1)

PTK2

Intron

2

chr9:4 237 128

293

SINE (Alu)

GLIS3

Intron

2

chr9:4 814 224

290

SINE (Alu)

RCL1

Intron

2

chr9:7 035 315

317

SINE (Alu)

KDM4C

Intron

2

chr9:7 852 522

326

SINE (Alu)

DMAC1

Intron

2

chr9:10 461 247

315

SINE (Alu)

PTPRD

Intron

2

chr9:15 234 388

126

Retroposon (SVA)

TTC39B

Intron

2

chr9:18 584 279

6 097

LINE (L1)

ADAMTSL1

Intron

2

chr9:30 495 884

1 261

LINE (L1)

LINC01242

Intron

2

chr9:30 560 926

63

SINE (Alu)

LINC01242

Intron

2

chr9:32 463 887

168

LINE (L1)

RIGI

Intron

2

chr9:32 906 891

65

LTR (ERV1)

APTX

Intron

2

chr9:33 130 552

2 028

Retroposon (SVA)

B4GALT1

Intron

2

chr9:37 594 236

324

SINE (Alu)

SHB

Intron

2

chr9:41 047 836

790

LINE (L1)

FRG1HP

Intron

2

chr9:61 209 379

338

SINE (Alu)

FAM74A4

Intron

2

chr9:67 083 505

299

SINE (Alu)

CNTNAP3P2

Intron

2

chr9:70 917 552

318

SINE (Alu)

TRPM3

Intron

2

chr9:71 308 789

325

SINE (Alu)

TRPM3

Intron

2

chr9:71 929 859

335

SINE (Alu)

C9orf85

Intron

2

chr9:72 616 616

313

SINE (Alu)

TMC1

Intron

2

chr9:72 800 719

334

SINE (Alu)

TMC1

Intron

2

chr9:72 806 388

97

Retroposon (SVA)

TMC1

Intron

2

chr9:72 928 052

347

SINE (Alu)

ALDH1A1

Intron

2

chr9:76 063 864

407

Retroposon (SVA)

PCSK5

Intron

2

chr9:76 836 353

326

SINE (Alu)

PRUNE2

Intron

2

chr9:90 432 247

306

SINE (Alu)

LINC01508

Intron

2

chr9:92 520 051

320

SINE (Alu)

CENPP

Intron

2

chr9:94 625 119

314

SINE (Alu)

FBP1

Intron

2

chr9:96 301 413

321

SINE (Alu)

HSD17B3

Intron

2

chr9:98 328 029

327

SINE (Alu)

GABBR2

Intron

2

chr9:103 314 170

189

SINE (Alu)

LINC01492

Intron

2

chr9:107 460 892

61

SINE (Alu)

LINC01509

Intron

2

chr9:109 499 102

307

SINE (Alu)

PTPN3

Promoter

2

chr9:109 499 102

307

SINE (Alu)

PALM2AKAP2

Intron

2

chr9:112 106 751

326

SINE (Alu)

SUSD1

Intron

2

chr9:112 514 852

225

Retroposon (SVA)

KIAA1958

Intron

2

chr9:112 525 962

261

Retroposon (SVA)

KIAA1958

Intron

2

chr9:115 165 982

292

SINE (Alu)

DELEC1

Intron

2

chr9:116 840 550

351

Retroposon (SVA)

LOC105376239

Intron

2

chr9:118 060 564

357

SINE (Alu)

TLR4

Intron

2

chr9:121 971 181

308

Retroposon (SVA)

TTLL11

Intron

2

chr9:123 802 498

79

LINE (L2)

DENND1A

Intron

2

chr9:125 458 887

431

Retroposon (SVA)

MAPKAP1

Intron

2

chr9:125 577 664

258

Retroposon (SVA)

MAPKAP1

Intron

2

chr9:125 780 971

115

Retroposon (SVA)

PBX3

Intron

2

chr9:129 689 820

312

SINE (Alu)

PRRX2

Intron

2

chr9:262 447

320

SINE (Alu)

DOCK8

Intron

2

chr9:848 895

334

SINE (Alu)

DMRT1

Intron

2

chr9:862 106

114

Retroposon (SVA)

DMRT1

Intron

2

chr10:14 442 801

327

SINE (Alu)

FRMD4A

Intron

2

chr10:17 670 781

800

Retroposon (SVA)

STAM

Intron

2

chr10:19 261 790

317

SINE (Alu)

MALRD1

Intron

2

chr10:21 057 584

49

SINE (Alu)

NEBL

Intron

2

chr10:25 418 756

6 047

LINE (L1)

GPR158

Intron

2

chr10:25 668 385

323

SINE (Alu)

LINC00836

Intron

2

chr10:26 587 715

268

SINE (Alu)

LINC03028

Intron

2

chr10:26 672 154

194

SINE (Alu)

SELENOOLP

Intron

2

chr10:28 813 597

314

SINE (Alu)

LINC01517

Intron

2

chr10:28 816 354

313

SINE (Alu)

LINC01517

Intron

2

chr10:29 697 180

97

Retroposon (SVA)

SVIL

Intron

2

chr10:29 729 670

173

SINE (Alu)

SVIL

Intron

2

chr10:30 325 832

312

SINE (Alu)

MTPAP

Intron

2

chr10:32 647 469

54

SINE (Alu)

CCDC7

Intron

2

chr10:34 256 748

319

SINE (Alu)

PARD3

Intron

2

chr10:46 461 032

319

SINE (Alu)

LINC00842

Intron

1

chr10:46 876 544

303

SINE (Alu)

FRMPD2B

Promoter

2

chr10:46 876 544

303

SINE (Alu)

FRMPD2B

Intron

2

chr10:49 163 557

337

SINE (Alu)

TMEM273

Intron

2

chr10:50 479 036

345

SINE (Alu)

SGMS1

Intron

2

chr10:52 102 653

275

SINE (Alu)

PRKG1

Intron

2

chr10:52 707 167

323

SINE (Alu)

LNCAROD

Intron

2

chr10:54 167 762

83

LTR (ERV1)

PCDH15

Intron

2

chr10:54 223 519

324

SINE (Alu)

PCDH15

Intron

2

chr10:54 380 550

330

SINE (Alu)

PCDH15

Intron

2

chr10:54 421 459

328

SINE (Alu)

PCDH15

Intron

2

chr10:55 002 597

62

LTR (ERV1)

PCDH15

Intron

2

chr10:59 225 142

326

SINE (Alu)

PHYHIPL

Intron

2

chr10:60 365 085

286

SINE (Alu)

ANK3

Intron

2

chr10:68 235 132

326

SINE (Alu)

LINC02640

Intron

2

chr10:69 850 403

310

SINE (Alu)

COL13A1

Intron

2

chr10:70 407 971

341

Retroposon (SVA)

EIF4EBP2

Intron

1

chr10:70 686 915

78

Retroposon (SVA)

ADAMTS14

Intron

2

chr10:70 845 655

320

SINE (Alu)

SGPL1

Intron

2

chr10:71 433 771

327

SINE (Alu)

CDH23

Intron

2

chr10:73 683 762

337

SINE (Alu)

AGAP5

Promoter

2

chr10:73 683 762

337

SINE (Alu)

AGAP5

Intron

2

chr10:74 470 576

142

LINE (L1)

ADK

Intron

2

chr10:75 333 382

180

Retroposon (SVA)

ZNF503-AS1

Intron

1

chr10:80 543 911

209

LTR (ERV1)

SH2D4B

Intron

1

chr10:84 223 486

314

SINE (Alu)

LRIT2

Intron

2

chr10:86 016 231

311

SINE (Alu)

GRID1

Intron

2

chr10:89 350 315

112

SINE (Alu)

IFIT3

Intron

2

chr10:92 975 822

223

Retroposon (SVA)

EXOC6

Intron

2

chr10:99 838 521

52

Retroposon (SVA)

ABCC2

Intron

1

chr10:101 975 999

320

SINE (Alu)

ARMH3

Intron

2

chr10:102 036 178

141

Retroposon (SVA)

ARMH3

Intron

2

chr10:103 129 540

177

Retroposon (SVA)

NT5C2

Intron

1

chr10:103 583 766

259

SINE (Alu)

NEURL1

Intron

2

chr10:104 057 438

194

SINE (Alu)

COL17A1

Intron

2

chr10:110 251 001

311

SINE (Alu)

MXI1

Intron

2

chr10:112 314 098

315

SINE (Alu)

GUCY2GP

Intron

2

chr10:114 787 733

90

Retroposon (SVA)

LOC101927692

Intron

2

chr10:116 335 447

324

SINE (Alu)

CCDC172

Intron

2

chr10:119 281 154

332

SINE (Alu)

GRK5

Intron

2

chr10:121 911 777

163

SINE (Alu)

ATE1

Intron

2

chr10:127 392 027

314

SINE (Alu)

DOCK1

Intron

2

chr10:130 096 568

97

LINE (L1)

C10orf143

Intron

2

chr10:132 874 286

169

LINE (L1)

CFAP46

Intron

2

chr10:133 217 518

118

SINE (Alu)

KNDC1

Intron

2

chr11:1 576 989

66

SINE (Alu)

KRTAP5-AS1

Intron

2

chr11:2 749 569

124

SINE (Alu)

KCNQ1

Intron

2

chr11:4 138 052

49

Retroposon (SVA)

RRM1

Intron

1

chr11:4 886 716

236

SINE (Alu)

MMP26

Intron

2

chr11:5 863 905

320

SINE (Alu)

TRIM5

Intron

2

chr11:6 349 738

67

SINE (Alu)

LOC101927825

Intron

2

chr11:7 331 214

329

SINE (Alu)

SYT9

Intron

2

chr11:8 424 808

327

SINE (Alu)

STK33

Intron

2

chr11:8 865 752

318

SINE (Alu)

DENND2B

Intron

2

chr11:9 864 386

330

SINE (Alu)

LOC101928008

Intron

2

chr11:10 615 934

315

SINE (Alu)

IRAG1

Intron

2

chr11:11 926 964

2 749

Retroposon (SVA)

USP47

Intron

2

chr11:13 791 469

332

SINE (Alu)

LINC02548

Intron

2

chr11:14 478 463

321

SINE (Alu)

COPB1

Intron

2

chr11:15 998 429

322

SINE (Alu)

SOX6

Intron

2

chr11:19 860 081

223

Retroposon (SVA)

NAV2

Intron

2

chr11:22 241 253

124

LINE (L1)

ANO5

Intron

2

chr11:22 243 729

1 122

LINE (L1)

ANO5

Intron

2

chr11:24 771 395

320

SINE (Alu)

LUZP2

Intron

2

chr11:27 121 782

6 058

LINE (L1)

BBOX1

Intron

2

chr11:27 436 218

388

LINE (L1)

LGR4

Intron

2

chr11:32 412 716

310

SINE (Alu)

WT1

Promoter

2

chr11:32 412 716

310

SINE (Alu)

WT1

Intron

2

chr11:42 034 345

330

SINE (Alu)

LINC02745

Intron

2

chr11:45 738 460

277

Retroposon (SVA)

LOC100507384

Intron

2

chr11:47 785 087

304

SINE (Alu)

NUP160

Intron

2

chr11:49 634 261

302

SINE (Alu)

GRM5P1

Intron

2

chr11:58 139 863

65

LINE (L1)

OR9Q1

Intron

2

chr11:59 645 329

383

Retroposon (SVA)

PATL1

Intron

2

chr11:60 525 909

315

SINE (Alu)

MS4A13

Intron

2

chr11:61 239 572

427

LTR (ERV1)

PGA4

Intron

1

chr11:62 492 876

319

SINE (Alu)

AHNAK

Intron

2

chr11:63 893 356

259

LINE (L1)

MARK2

Intron

2

chr11:65 239 632

130

Retroposon (SVA)

SLC22A20P

Intron

2

chr11:66 216 853

320

SINE (Alu)

PACS1

Intron

2

chr11:67 222 617

535

Retroposon (SVA)

KDM2A

Intron

2

chr11:74 353 859

76

Retroposon (SVA)

PGM2L1

Intron

2

chr11:74 656 965

91

LINE (L1)

POLD3

Intron

2

chr11:76 619 299

608

Retroposon (SVA)

LINC02757

Intron

2

chr11:77 098 076

179

Retroposon (SVA)

CAPN5

Intron

2

chr11:77 098 581

49

Retroposon (SVA)

CAPN5

Intron

1

chr11:77 098 721

225

Retroposon (SVA)

CAPN5

Intron

2

chr11:77 279 527

313

SINE (Alu)

GDPD4

Intron

2

chr11:78 784 911

329

SINE (Alu)

TENM4

Intron

2

chr11:78 879 330

594

Retroposon (SVA)

TENM4

Intron

1

chr11:83 018 315

61

LINE (L1)

RAB30

Intron

2

chr11:86 259 222

317

SINE (Alu)

EED

Intron

2

chr11:87 154 955

166

LINE (L1)

TMEM135

Intron

2

chr11:89 474 978

332

SINE (Alu)

NOX4

Intron

2

chr11:90 267 331

186

LINE (L1)

DISC1FP1

Intron

2

chr11:92 875 310

314

SINE (Alu)

FAT3

Intron

2

chr11:99 858 676

328

SINE (Alu)

CNTN5

Intron

2

chr11:100 748 679

67

LTR (ERV1)

ARHGAP42

Intron

2

chr11:100 910 651

321

SINE (Alu)

ARHGAP42

Intron

2

chr11:102 477 580

220

SINE (Alu)

LOC102723838

Intron

2

chr11:103 330 537

324

SINE (Alu)

DYNC2H1

Intron

2

chr11:104 915 862

323

SINE (Alu)

CASP4LP

Intron

2

chr11:112 331 792

137

SINE (Alu)

LINC02762

Intron

2

chr11:117 251 250

88

Retroposon (SVA)

RNF214

Intron

2

chr11:117 812 780

317

SINE (Alu)

DSCAML1

Intron

2

chr11:118 449 416

320

SINE (Alu)

KMT2A

Intron

2

chr11:119 009 438

322

SINE (Alu)

CENATAC

Promoter

2

chr11:119 009 438

322

SINE (Alu)

CENATAC

Intron

2

chr11:119 253 538

265

Retroposon (SVA)

CBL

Intron

2

chr11:119 507 624

806

Retroposon (SVA)

USP2-AS1

Intron

2

chr11:119 507 776

550

Retroposon (SVA)

USP2-AS1

Intron

2

chr11:122 406 922

307

SINE (Alu)

MIR100HG

Intron

2

chr11:127 071 221

331

SINE (Alu)

LOC101929473

Intron

2

chr11:129 889 646

315

SINE (Alu)

NFRKB

Intron

2

chr11:134 435 747

317

LINE (L1)

B3GAT1-DT

Promoter

2

chr11:134 435 747

317

LINE (L1)

B3GAT1-DT

Intron

2

chr11:428 013

318

SINE (Alu)

ANO9

Intron

2

chr11:696 721

134

SINE (Alu)

EPS8L2

Intron

2

chr11:711 988

299

SINE (Alu)

EPS8L2

Intron

2

chr12:1 980 674

319

SINE (Alu)

CACNA1C

Intron

2

chr12:2 829 906

262

SINE (Alu)

ITFG2

Promoter

2

chr12:2 829 906

262

SINE (Alu)

ITFG2

Intron

2

chr12:7 451 371

285

SINE (Alu)

CD163L1

Intron

2

chr12:8 184 249

400

Retroposon (SVA)

ZNF705A

Intron

2

chr12:9 349 121

79

Retroposon (SVA)

LINC02367

Intron

2

chr12:9 996 539

250

SINE (Alu)

CLEC1B

Intron

2

chr12:10 081 587

318

SINE (Alu)

CLEC1A

Intron

2

chr12:11 026 423

307

SINE (Alu)

PRH1-PRR4

Intron

2

chr12:12 780 744

1 782

LINE (L1)

APOLD1

Intron

2

chr12:14 951 697

321

SINE (Alu)

ARHGDIB

Promoter

2

chr12:14 951 697

321

SINE (Alu)

ARHGDIB

Intron

2

chr12:18 598 680

288

SINE (Alu)

PIK3C2G

Intron

2

chr12:19 653 272

285

SINE (Alu)

AEBP2

Intron

2

chr12:21 662 601

62

LTR (ERV1)

LDHB

Intron

2

chr12:21 933 008

332

SINE (Alu)

ABCC9

Intron

2

chr12:26 785 265

174

Retroposon (SVA)

ITPR2

Intron

1

chr12:26 785 882

126

Retroposon (SVA)

ITPR2

Intron

1

chr12:27 711 861

315

SINE (Alu)

MRPS35

Intron

2

chr12:28 264 364

308

SINE (Alu)

CCDC91

Intron

2

chr12:28 285 662

315

SINE (Alu)

CCDC91

Intron

2

chr12:29 663 691

185

SINE (Alu)

TMTC1

Intron

2

chr12:29 670 964

312

SINE (Alu)

TMTC1

Intron

2

chr12:31 650 024

315

SINE (Alu)

ETFBKMT

Intron

2

chr12:31 923 477

313

SINE (Alu)

LINC02422

Intron

2

chr12:40 279 206

306

SINE (Alu)

LRRK2

Intron

2

chr12:40 438 980

306

SINE (Alu)

MUC19

Intron

2

chr12:41 453 905

240

SINE (Alu)

PDZRN4

Intron

2

chr12:42 228 294

98

Retroposon (SVA)

YAF2

Intron

2

chr12:43 524 175

1 076

LINE (L1)

ADAMTS20

Intron

2

chr12:45 025 760

310

SINE (Alu)

DBX2

Intron

2

chr12:50 776 324

308

SINE (Alu)

ATF1

Intron

2

chr12:56 558 296

304

SINE (Alu)

RBMS2

Intron

2

chr12:62 883 907

329

SINE (Alu)

PPM1H

Intron

2

chr12:64 204 047

85

LINE (L1)

KICS2

Intron

2

chr12:64 783 847

188

SINE (Alu)

TBC1D30

Intron

2

chr12:66 617 791

332

SINE (Alu)

GRIP1

Intron

2

chr12:67 954 736

324

SINE (Alu)

LINC01479

Intron

2

chr12:70 086 207

63

LTR (ERV1)

PRANCR

Intron

1

chr12:78 003 152

329

SINE (Alu)

NAV3

Intron

2

chr12:80 805 951

135

SINE (Alu)

LIN7A

Intron

2

chr12:85 112 496

781

LINE (L1)

LRRIQ1

Intron

2

chr12:86 811 026

109

LINE (L1)

MGAT4C

Intron

2

chr12:91 448 414

292

SINE (Alu)

LOC105369896

Intron

2

chr12:92 452 722

65

SINE (Alu)

LINC02397

Intron

2

chr12:95 355 501

310

SINE (Alu)

LOC105369917

Intron

2

chr12:95 907 477

51

Retroposon (SVA)

CCDC38

Intron

2

chr12:99 387 859

177

SINE (Alu)

ANKS1B

Intron

2

chr12:100 294 427

196

Retroposon (SVA)

SCYL2

Intron

1

chr12:104 923 205

187

SINE (Alu)

SLC41A2

Intron

2

chr12:105 044 596

308

SINE (Alu)

NOPCHAP1

Intron

2

chr12:106 497 167

321

SINE (Alu)

POLR3B

Intron

2

chr12:124 073 312

310

SINE (Alu)

ZNF664

Intron

2

chr12:126 405 316

326

SINE (Alu)

LINC02350

Intron

2

chr12:130 604 739

323

SINE (Alu)

RIMBP2

Intron

2

chr12:131 926 411

79

Retroposon (SVA)

LOC107984455

Intron

2

chr12:132 789 672

57

SINE (Alu)

GOLGA3

Intron

1

chr12:132 868 572

181

SINE (Alu)

CHFR

Intron

2

chr12:676 194

133

SINE (Alu)

LINC02455

Intron

2

chr13:18 196 939

197

SINE (Alu)

FAM230C

Intron

2

chr13:21 320 624

286

SINE (Alu)

MIPEPP3

Intron

2

chr13:21 448 227

144

Retroposon (SVA)

ZDHHC20

Intron

2

chr13:21 448 228

497

Retroposon (SVA)

ZDHHC20

Intron

2

chr13:21 448 382

77

Retroposon (SVA)

ZDHHC20

Intron

1

chr13:25 264 752

135

SINE (Alu)

MTMR6

Intron

2

chr13:28 964 737

320

SINE (Alu)

MTUS2

Intron

2

chr13:28 990 621

66

LTR (ERV1)

MTUS2

Intron

2

chr13:40 955 535

98

Retroposon (SVA)

ELF1

Intron

2

chr13:41 881 722

204

Retroposon (SVA)

VWA8

Intron

2

chr13:41 881 722

126

Retroposon (SVA)

VWA8

Intron

2

chr13:42 152 649

324

SINE (Alu)

DGKH

Intron

2

chr13:42 197 251

413

LINE (L1)

DGKH

Intron

2

chr13:43 416 199

447

Retroposon (SVA)

ENOX1

Intron

2

chr13:45 485 411

795

Retroposon (SVA)

COG3

Intron

2

chr13:46 073 596

308

SINE (Alu)

CPB2-AS1

Intron

2

chr13:46 470 173

298

SINE (Alu)

LINC01198

Promoter

2

chr13:46 470 173

298

SINE (Alu)

LINC01198

Intron

2

chr13:46 557 525

328

SINE (Alu)

LRCH1

Intron

2

chr13:46 584 006

3 087

Retroposon (SVA)

LRCH1

Intron

2

chr13:59 890 901

326

SINE (Alu)

DIAPH3

Intron

2

chr13:60 037 033

130

LINE (L1)

DIAPH3-AS1

Intron

2

chr13:60 647 021

1 430

LINE (L1)

LINC00378

Intron

2

chr13:60 715 401

390

LINE (L1)

LINC00378

Intron

2

chr13:60 758 287

312

SINE (Alu)

LINC00378

Intron

2

chr13:60 793 259

309

SINE (Alu)

LINC00378

Intron

2

chr13:67 329 321

237

SINE (Alu)

LINC00364

Intron

2

chr13:78 010 527

313

SINE (Alu)

OBI1-AS1

Intron

2

chr13:78 077 535

313

SINE (Alu)

OBI1-AS1

Intron

2

chr13:80 799 588

328

SINE (Alu)

LOC105370278

Intron

2

chr13:80 948 934

330

SINE (Alu)

LOC105370278

Intron

2

chr13:84 899 424

231

SINE (Alu)

LOC105370290

Intron

2

chr13:89 749 575

327

SINE (Alu)

LOC107984621

Intron

2

chr13:91 609 018

321

SINE (Alu)

GPC5

Intron

2

chr13:91 861 711

294

SINE (Alu)

GPC5

Intron

2

chr13:92 172 972

319

SINE (Alu)

GPC5

Intron

2

chr13:92 448 880

266

SINE (Alu)

GPC5

Intron

2

chr13:92 538 791

193

LINE (L1)

GPC5

Intron

2

chr13:94 109 467

85

LINE (L1)

GPC6

Intron

2

chr13:98 151 042

326

SINE (Alu)

FARP1

Intron

2

chr13:100 883 706

318

SINE (Alu)

NALCN-AS1

Intron

2

chr13:101 737 015

334

SINE (Alu)

FGF14

Intron

2

chr13:112 678 489

80

Retroposon (SVA)

ATP11AUN

Intron

2

chr13:112 866 638

313

SINE (Alu)

ATP11A

Intron

2

chr13:112 937 994

244

LTR (ERV1)

MCF2L

Intron

2

chr13:113 357 049

132

SINE (Alu)

GRTP1-AS1

Intron

2

chr13:114 116 529

325

SINE (Alu)

RASA3

Intron

2

chr14:20 016 135

352

SINE (Alu)

OR4K14

Intron

2

chr14:20 506 551

125

Retroposon (SVA)

RNASE10

Intron

2

chr14:20 506 760

73

Retroposon (SVA)

RNASE10

Intron

2

chr14:22 637 459

176

Retroposon (SVA)

OR6J1

Intron

2

chr14:22 637 543

533

Retroposon (SVA)

OR6J1

Intron

1

chr14:24 212 532

165

SINE (Alu)

CHMP4A

Promoter

1

chr14:24 212 532

165

SINE (Alu)

TM9SF1

Intron

1

chr14:24 212 676

166

SINE (Alu)

CHMP4A

Promoter

1

chr14:24 212 676

166

SINE (Alu)

TM9SF1

Intron

1

chr14:24 473 726

118

LTR (ERV1)

LOC101927045

Intron

2

chr14:27 832 046

439

LINE (L1)

MIR3171HG

Intron

2

chr14:30 975 089

307

SINE (Alu)

STRN3

Intron

2

chr14:35 009 342

314

SINE (Alu)

SRP54

Intron

2

chr14:37 555 350

126

Retroposon (SVA)

MIPOL1

Intron

2

chr14:37 890 416

335

SINE (Alu)

TTC6

Intron

2

chr14:39 405 877

2 984

LINE (L1)

FBXO33

Intron

2

chr14:39 843 742

321

SINE (Alu)

LOC105370462

Intron

2

chr14:40 110 466

331

SINE (Alu)

LOC105370462

Intron

2

chr14:40 123 223

131

SINE (Alu)

LOC105370462

Intron

2

chr14:51 252 267

312

SINE (Alu)

TMX1

Intron

2

chr14:51 349 610

337

SINE (Alu)

LINC00640

Intron

2

chr14:52 123 272

130

LTR (ERV1)

LINC02319

Intron

2

chr14:52 837 362

56

LTR (ERV1)

LOC105370500

Intron

2

chr14:53 311 386

324

SINE (Alu)

LOC105370502

Intron

2

chr14:55 329 133

320

SINE (Alu)

FBXO34

Intron

2

chr14:57 041 271

330

SINE (Alu)

OTX2-AS1

Intron

2

chr14:59 055 705

1 047

LINE (L1)

LOC107984642

Intron

2

chr14:62 754 961

313

SINE (Alu)

KCNH5

Intron

2

chr14:62 759 564

335

SINE (Alu)

KCNH5

Intron

2

chr14:64 038 275

388

Retroposon (SVA)

SYNE2

Intron

2

chr14:66 467 727

321

SINE (Alu)

CCDC196

Intron

2

chr14:66 703 612

283

LINE (L1)

GPHN

Intron

2

chr14:70 397 965

57

LTR (ERV1)

SYNJ2BP-COX16

Intron

2

chr14:70 813 500

128

SINE (Alu)

MAP3K9-DT

Intron

2

chr14:73 353 583

134

SINE (Alu)

NUMB

Intron

2

chr14:73 535 545

1 418

LTR (ERV1)

HEATR4

Intron

1

chr14:73 535 995

719

LTR (ERV1)

HEATR4

Intron

1

chr14:73 546 923

185

SINE (Alu)

HEATR4

Intron

2

chr14:73 557 101

309

SINE (Alu)

HEATR4

Intron

2

chr14:75 729 453

1 012

LINE (L1)

TTLL5

Intron

2

chr14:76 821 592

170

Retroposon (SVA)

ANGEL1

Intron

1

chr14:76 821 667

172

Retroposon (SVA)

ANGEL1

Intron

1

chr14:77 460 456

318

SINE (Alu)

AHSA1

Intron

2

chr14:78 516 349

331

SINE (Alu)

NRXN3

Intron

2

chr14:80 488 209

1 889

LINE (L1)

CEP128

Intron

2

chr14:81 320 428

2 691

Retroposon (SVA)

STON2

Intron

2

chr14:89 608 202

143

SINE (Alu)

FOXN3

Intron

2

chr14:89 788 459

133

SINE (Alu)

FOXN3

Intron

2

chr14:90 718 834

322

SINE (Alu)

TTC7B

Intron

2

chr14:91 649 660

317

SINE (Alu)

CATSPERB

Intron

2

chr14:91 658 708

312

SINE (Alu)

CATSPERB

Intron

2

chr14:93 364 578

315

SINE (Alu)

UNC79

Intron

2

chr14:100 345 061

96

Retroposon (SVA)

WARS1

Intron

2

chr14:102 676 504

171

Retroposon (SVA)

RCOR1

Intron

2

chr15:22 584 265

135

SINE (Alu)

HERC2P2

Intron

2

chr15:24 892 516

91

SINE (Alu)

PWRN1

Intron

2

chr15:25 758 509

1 459

LTR (ERV1)

ATP10A

Intron

1

chr15:26 627 364

329

SINE (Alu)

GABRB3

Intron

2

chr15:30 674 565

187

SINE (Alu)

LOC100288637

Intron

1

chr15:34 346 663

82

SINE (Alu)

NUTM1

Intron

2

chr15:35 656 775

51

Retroposon (SVA)

DPH6-DT

Intron

2

chr15:35 804 106

309

SINE (Alu)

DPH6-DT

Intron

2

chr15:39 894 051

97

Retroposon (SVA)

GPR176

Intron

2

chr15:40 631 295

709

LINE (L1)

KNL1

Intron

2

chr15:40 808 119

315

SINE (Alu)

ZFYVE19

Promoter

2

chr15:40 808 119

315

SINE (Alu)

ZFYVE19

Intron

2

chr15:43 076 804

126

Retroposon (SVA)

UBR1

Intron

2

chr15:44 531 316

302

SINE (Alu)

EIF3J-DT

Intron

2

chr15:45 277 713

311

SINE (Alu)

SLC28A2-AS1

Intron

2

chr15:45 833 789

325

SINE (Alu)

LOC105370802

Intron

2

chr15:47 215 130

6 055

LINE (L1)

SEMA6D

Intron

2

chr15:47 279 101

87

LINE (L1)

SEMA6D

Intron

2

chr15:51 294 564

66

Retroposon (SVA)

CYP19A1

Intron

2

chr15:54 508 181

314

SINE (Alu)

UNC13C

Intron

2

chr15:55 301 465

306

SINE (Alu)

RAB27A

Intron

2

chr15:55 303 250

176

Retroposon (SVA)

RAB27A

Intron

2

chr15:60 365 043

330

SINE (Alu)

ANXA2

Intron

2

chr15:62 026 065

327

SINE (Alu)

VPS13C

Intron

2

chr15:66 375 798

323

SINE (Alu)

TIPIN

Intron

2

chr15:67 002 508

312

SINE (Alu)

LOC102723493

Promoter

2

chr15:67 002 508

312

SINE (Alu)

LOC102723493

Intron

2

chr15:67 352 555

318

SINE (Alu)

IQCH

Intron

2

chr15:68 395 669

4 447

LINE (L1)

ITGA11

Intron

2

chr15:71 757 533

133

SINE (Alu)

THSD4

Intron

2

chr15:71 768 925

176

Retroposon (SVA)

THSD4

Intron

1

chr15:71 769 394

126

Retroposon (SVA)

THSD4

Intron

2

chr15:72 347 195

318

SINE (Alu)

HEXA

Promoter

2

chr15:72 347 195

318

SINE (Alu)

LOC105370887

Intron

2

chr15:75 481 586

401

Retroposon (SVA)

PTPN9

Intron

2

chr15:75 503 575

196

Retroposon (SVA)

PTPN9

Intron

2

chr15:76 533 663

281

SINE (Alu)

SCAPER

Intron

2

chr15:78 132 275

164

SINE (Alu)

CIB2

Promoter

2

chr15:78 132 275

164

SINE (Alu)

IDH3A

Intron

2

chr15:78 520 843

147

Retroposon (SVA)

HYKK

Intron

2

chr15:78 644 312

318

SINE (Alu)

CHRNB4

Intron

2

chr15:80 355 807

93

SINE (Alu)

ARNT2-DT

Intron

2

chr15:81 100 243

313

SINE (Alu)

CFAP161

Intron

2

chr15:81 743 314

325

SINE (Alu)

LOC102723985

Intron

2

chr15:85 444 567

334

SINE (Alu)

AKAP13

Intron

2

chr15:85 681 718

325

SINE (Alu)

AKAP13

Promoter

2

chr15:85 681 718

325

SINE (Alu)

AKAP13

Intron

2

chr15:89 854 810

78

Retroposon (SVA)

AP3S2

Intron

2

chr15:92 768 257

99

Retroposon (SVA)

FAM174B

Intron

1

chr15:93 023 921

318

SINE (Alu)

CHD2

Intron

2

chr15:93 292 547

315

SINE (Alu)

LOC105370982

Intron

2

chr15:97 656 736

1 101

LINE (L1)

LINC00923

Intron

2

chr15:98 079 273

885

LINE (L1)

LINC02251

Intron

2

chr15:100 270 770

308

SINE (Alu)

ADAMTS17

Intron

2

chr15:100 272 594

328

SINE (Alu)

ADAMTS17

Intron

2

chr16:1 599 474

808

Retroposon (SVA)

LOC105371046

Intron

2

chr16:3 039 306

321

SINE (Alu)

MMP25-AS1

Intron

2

chr16:4 759 340

329

SINE (Alu)

ZNF500

Promoter

2

chr16:4 759 340

329

SINE (Alu)

ZNF500

Intron

2

chr16:5 202 288

126

Retroposon (SVA)

LOC105371067

Intron

2

chr16:5 202 599

50

Retroposon (SVA)

LOC105371067

Intron

1

chr16:5 202 929

301

Retroposon (SVA)

LOC105371067

Intron

2

chr16:5 295 016

320

SINE (Alu)

RBFOX1

Intron

2

chr16:6 743 824

1 436

LINE (L1)

RBFOX1

Intron

2

chr16:6 839 146

326

SINE (Alu)

RBFOX1

Intron

2

chr16:7 176 224

324

SINE (Alu)

RBFOX1

Intron

2

chr16:7 491 379

303

SINE (Alu)

RBFOX1

Intron

2

chr16:10 992 534

314

SINE (Alu)

CLEC16A

Intron

2

chr16:11 335 939

321

Retroposon (SVA)

LOC105371082

Intron

1

chr16:13 437 866

56

SINE (Alu)

SHISA9

Intron

2

chr16:15 399 099

313

SINE (Alu)

MPV17L

Intron

2

chr16:16 168 217

86

SINE (Alu)

ABCC6

Intron

2

chr16:19 506 178

318

SINE (Alu)

GDE1

Intron

2

chr16:23 853 965

324

SINE (Alu)

PRKCB

Intron

2

chr16:24 109 273

326

Retroposon (SVA)

PRKCB

Intron

2

chr16:24 109 273

629

Retroposon (SVA)

PRKCB

Intron

2

chr16:24 316 243

316

SINE (Alu)

CACNG3

Intron

2

chr16:31 105 127

147

Retroposon (SVA)

BCKDK

Promoter

2

chr16:53 841 055

324

SINE (Alu)

FTO

Intron

2

chr16:56 739 403

857

Retroposon (SVA)

NUP93

Intron

1

chr16:59 942 554

319

SINE (Alu)

LINC02141

Intron

2

chr16:60 007 227

320

SINE (Alu)

LINC02141

Intron

2

chr16:65 448 283

314

SINE (Alu)

LINC00922

Intron

2

chr16:69 820 423

53

SINE (Alu)

WWP2

Intron

2

chr16:70 167 766

89

SINE (Alu)

LOC400541

Intron

2

chr16:71 733 509

74

SINE (Alu)

AP1G1

Intron

2

chr16:72 695 339

1 629

LINE (L1)

ZFHX3-AS1

Intron

2

chr16:77 196 294

314

SINE (Alu)

MON1B

Intron

2

chr16:77 806 370

134

SINE (Alu)

VAT1L

Intron

1

chr16:78 658 928

323

SINE (Alu)

WWOX

Intron

2

chr16:80 183 526

321

SINE (Alu)

DYNLRB2-AS1

Intron

2

chr16:80 663 083

326

SINE (Alu)

CDYL2

Intron

2

chr16:80 963 376

312

SINE (Alu)

ARLNC1

Intron

2

chr16:81 244 406

311

SINE (Alu)

BCO1

Intron

2

chr16:82 131 072

299

SINE (Alu)

HSD17B2-AS1

Intron

2

chr16:82 878 496

321

SINE (Alu)

CDH13

Intron

2

chr16:83 632 754

332

SINE (Alu)

CDH13

Intron

2

chr16:84 226 714

334

SINE (Alu)

KCNG4

Intron

2

chr16:85 075 085

330

SINE (Alu)

KIAA0513

Intron

2

chr16:88 462 841

334

SINE (Alu)

ZFPM1

Intron

2

chr16:89 224 966

334

SINE (Alu)

ZNF778

Intron

2

chr16:89 617 671

350

SINE (Alu)

DPEP1

Intron

2

chr17:2 448 181

125

Retroposon (SVA)

METTL16

Intron

2

chr17:3 544 157

132

SINE (Alu)

TRPV3

Intron

2

chr17:4 132 659

134

SINE (Alu)

ZZEF1

Intron

2

chr17:5 516 069

324

SINE (Alu)

NLRP1

Intron

2

chr17:9 269 002

134

SINE (Alu)

STX8

Intron

2

chr17:10 175 248

317

SINE (Alu)

GAS7

Intron

2

chr17:11 972 687

60

LTR (ERV1)

ZNF18

Intron

2

chr17:13 533 513

296

SINE (Alu)

HS3ST3A1

Intron

2

chr17:13 896 324

312

SINE (Alu)

COX10-DT

Intron

2

chr17:16 095 666

104

Retroposon (SVA)

NCOR1

Intron

2

chr17:16 330 605

317

SINE (Alu)

PIGL

Intron

2

chr17:16 630 887

1 318

Retroposon (SVA)

ZNF624

Intron

2

chr17:16 699 504

133

SINE (Alu)

CCDC144A

Intron

2

chr17:16 769 810

318

SINE (Alu)

CCDC144A

Intron

2

chr17:18 430 192

327

SINE (Alu)

KRT17P2

Promoter

2

chr17:18 430 192

327

SINE (Alu)

KRT17P2

Intron

2

chr17:18 888 562

354

Retroposon (SVA)

PRPSAP2

Intron

2

chr17:19 627 935

524

Retroposon (SVA)

SLC47A1P2

Intron

2

chr17:21 292 724

121

SINE (Alu)

MAP2K3

Intron

2

chr17:28 456 137

1 158

Retroposon (SVA)

RSKR

Intron

2

chr17:28 604 078

97

Retroposon (SVA)

SPAG5-AS1

Intron

2

chr17:30 071 289

1 212

LINE (L1)

EFCAB5

Intron

2

chr17:30 736 333

760

Retroposon (SVA)

SUZ12P1

Intron

2

chr17:32 310 717

169

SINE (Alu)

RHBDL3

Intron

2

chr17:32 318 457

185

SINE (Alu)

RHBDL3

Intron

2

chr17:32 566 829

309

SINE (Alu)

MYO1D

Intron

2

chr17:38 594 628

318

SINE (Alu)

SRCIN1

Intron

2

chr17:40 186 588

310

SINE (Alu)

RAPGEFL1

Intron

2

chr17:42 973 221

273

Retroposon (SVA)

PTGES3L-AARSD1

Intron

2

chr17:45 583 232

3 267

Retroposon (SVA)

LRRC37A4P

Intron

2

chr17:47 325 026

261

SINE (Alu)

ITGB3

Intron

2

chr17:48 427 626

323

SINE (Alu)

SKAP1

Intron

2

chr17:51 452 021

304

SINE (Alu)

LINC02072

Intron

2

chr17:56 870 207

293

SINE (Alu)

TRIM25

Intron

2

chr17:61 908 813

311

SINE (Alu)

INTS2

Intron

2

chr17:62 996 973

190

SINE (Alu)

TANC2

Intron

2

chr17:63 488 528

290

SINE (Alu)

ACE

Intron

2

chr17:63 654 314

314

SINE (Alu)

MAP3K3

Intron

2

chr17:72 700 020

318

SINE (Alu)

SLC39A11

Intron

2

chr17:72 701 862

139

SINE (Alu)

SLC39A11

Intron

2

chr17:81 146 946

326

SINE (Alu)

AATK

Intron

2

chr17:82 631 585

304

SINE (Alu)

WDR45B

Intron

2

chr17:362 087

160

LTR (ERV1)

RPH3AL

Intron

2

chr17:572 391

97

Retroposon (SVA)

VPS53

Intron

2

chr17:598 865

418

Retroposon (SVA)

VPS53

Intron

2

chr17:598 886

273

Retroposon (SVA)

VPS53

Intron

1

chr18:1 235 775

321

SINE (Alu)

LOC105371953

Intron

2

chr18:10 911 126

315

SINE (Alu)

PIEZO2

Intron

2

chr18:12 615 769

330

SINE (Alu)

SPIRE1

Intron

2

chr18:21 986 488

321

SINE (Alu)

LINC01900

Intron

2

chr18:23 577 366

155

LTR (ERV1)

NPC1

Promoter

2

chr18:23 577 366

155

LTR (ERV1)

NPC1

Intron

2

chr18:26 958 048

318

SINE (Alu)

AQP4-AS1

Intron

2

chr18:32 609 840

316

SINE (Alu)

LOC112268208

Intron

2

chr18:41 355 349

314

SINE (Alu)

LOC105372083

Intron

2

chr18:48 347 264

57

SINE (Alu)

ZBTB7C

Intron

2

chr18:52 405 374

324

SINE (Alu)

DCC

Intron

2

chr18:53 460 168

322

SINE (Alu)

DCC

Intron

2

chr18:55 478 829

318

SINE (Alu)

MIR4529

Promoter

2

chr18:55 478 829

318

SINE (Alu)

TCF4-AS1

Intron

2

chr18:56 689 827

330

SINE (Alu)

WDR7

Intron

2

chr18:57 632 891

275

Retroposon (SVA)

ATP8B1-AS1

Intron

2

chr18:57 633 005

450

Retroposon (SVA)

ATP8B1-AS1

Intron

2

chr18:57 642 304

305

LTR (ERV1)

ATP8B1-AS1

Intron

1

chr18:57 642 408

101

LTR (ERV1)

ATP8B1-AS1

Intron

1

chr18:57 713 755

143

SINE (Alu)

LOC105372141

Intron

2

chr18:59 482 874

313

SINE (Alu)

CCBE1

Intron

2

chr18:65 820 032

317

SINE (Alu)

CDH7

Intron

2

chr18:68 731 923

315

SINE (Alu)

CCDC102B

Intron

2

chr18:68 905 255

332

SINE (Alu)

CCDC102B

Intron

2

chr18:74 269 351

63

LINE (L2)

CYB5A

Intron

2

chr18:76 241 968

322

SINE (Alu)

LOC105372209

Intron

2

chr18:76 851 081

311

SINE (Alu)

ZNF236

Promoter

2

chr18:76 851 081

311

SINE (Alu)

ZNF236

Intron

2

chr18:77 044 930

317

SINE (Alu)

MBP

Intron

2

chr18:390 833

327

SINE (Alu)

COLEC12

Intron

2

chr19:2 559 735

124

SINE (Alu)

GNG7

Intron

2

chr19:3 287 347

319

SINE (Alu)

CELF5

Intron

2

chr19:5 761 462

154

LTR (ERVL)

CATSPERD

Intron

2

chr19:5 857 371

69

LTR (ERV1)

LOC101928844

Intron

2

chr19:6 355 382

75

Retroposon (SVA)

ACER1

Intron

2

chr19:6 923 838

323

SINE (Alu)

ADGRE1

Intron

2

chr19:7 739 124

316

SINE (Alu)

CLEC4G

Intron

2

chr19:8 896 255

304

SINE (Alu)

MUC16

Promoter

2

chr19:8 896 255

304

SINE (Alu)

MUC16

Intron

2

chr19:10 337 271

310

SINE (Alu)

ICAM3

Intron

2

chr19:12 621 713

307

Retroposon (SVA)

ZNF791

Intron

2

chr19:17 094 112

146

SINE (Alu)

MYO9B

Intron

2

chr19:17 722 278

164

SINE (Alu)

MAP1S

Intron

2

chr19:18 724 788

2 834

Retroposon (SVA)

CRTC1

Intron

2

chr19:20 149 557

148

Retroposon (SVA)

LOC105372310

Intron

2

chr19:20 437 085

77

LTR (ERVL)

LOC105372317

Intron

2

chr19:20 563 164

316

SINE (Alu)

LOC105372316

Intron

2

chr19:21 577 498

319

SINE (Alu)

LOC101929007

Intron

2

chr19:21 577 658

145

SINE (Alu)

LOC101929007

Intron

2

chr19:21 583 747

301

SINE (Alu)

LOC101929007

Intron

1

chr19:23 768 604

321

SINE (Alu)

RPSAP58

Intron

2

chr19:23 828 482

1 553

Retroposon (SVA)

RPSAP58

Intron

2

chr19:23 845 118

2 428

Retroposon (SVA)

RPSAP58

Intron

2

chr19:31 199 763

354

SINE (Alu)

LINC01791

Intron

2

chr19:35 905 651

317

SINE (Alu)

TYROBP

Intron

2

chr19:36 480 621

312

SINE (Alu)

ZNF566

Intron

2

chr19:38 269 830

114

SINE (Alu)

SPINT2

Intron

2

chr19:38 541 449

134

SINE (Alu)

RYR1

Intron

2

chr19:39 905 477

312

SINE (Alu)

FCGBP

Intron

2

chr19:52 720 518

73

Retroposon (SVA)

ZNF611

Intron

2

chr19:55 064 841

306

SINE (Alu)

RDH13

Promoter

2

chr19:55 064 841

306

SINE (Alu)

RDH13

Intron

2

chr19:56 454 674

316

SINE (Alu)

ZNF667

Intron

2

chr20:1 149 836

155

SINE (Alu)

PSMF1

Intron

2

chr20:2 271 514

272

SINE (Alu)

TGM3

Intron

2

chr20:3 261 760

311

SINE (Alu)

DNAAF9

Intron

2

chr20:8 689 955

304

SINE (Alu)

PLCB1

Intron

2

chr20:9 641 462

118

LTR (ERV1)

PAK5

Intron

2

chr20:11 300 930

123

LINE (L1)

LOC339593

Intron

2

chr20:15 107 012

324

SINE (Alu)

MACROD2

Intron

2

chr20:15 125 949

291

SINE (Alu)

MACROD2

Intron

2

chr20:16 498 848

324

LINE (L1)

KIF16B

Intron

2

chr20:18 689 894

175

SINE (Alu)

DTD1

Intron

2

chr20:20 115 291

326

SINE (Alu)

CFAP61

Intron

2

chr20:25 562 187

443

Retroposon (SVA)

NINL

Intron

2

chr20:30 345 338

321

SINE (Alu)

FAM242A

Intron

2

chr20:35 213 917

183

SINE (Alu)

PROCR

Intron

2

chr20:35 361 226

301

SINE (Alu)

UQCC1

Intron

2

chr20:35 564 380

148

SINE (Alu)

FER1L4

Intron

2

chr20:35 870 631

323

SINE (Alu)

PHF20

Intron

2

chr20:44 676 839

2 738

Retroposon (SVA)

LINC01260

Intron

2

chr20:47 525 869

146

Retroposon (SVA)

NCOA3

Intron

2

chr20:47 525 872

344

Retroposon (SVA)

NCOA3

Intron

2

chr20:47 589 925

2 892

Retroposon (SVA)

NCOA3

Intron

2

chr20:48 685 898

193

SINE (Alu)

PREX1

Intron

2

chr20:50 685 661

314

SINE (Alu)

RIPOR3

Intron

2

chr20:60 439 016

75

LINE (L1)

MIR646HG

Intron

2

chr20:60 600 158

76

LTR (ERVL)

MIR646HG

Intron

2

chr20:63 873 047

325

SINE (Alu)

TPD52L2

Intron

2

chr21:10 508 068

56

LINE (L1)

BAGE2

Intron

2

chr21:13 042 671

317

SINE (Alu)

ANKRD30BP2

Promoter

1

chr21:13 042 671

317

SINE (Alu)

ANKRD30BP2

Intron

1

chr21:15 556 506

387

LINE (L1)

LOC101927745

Intron

2

chr21:24 981 909

324

SINE (Alu)

LINC01692

Intron

2

chr21:27 385 451

316

SINE (Alu)

LOC105372762

Intron

2

chr21:32 433 906

139

SINE (Alu)

EVA1C

Intron

2

chr21:32 482 930

67

SINE (Alu)

EVA1C

Intron

2

chr21:35 865 629

323

SINE (Alu)

LOC101928269

Intron

2

chr21:37 632 243

323

SINE (Alu)

KCNJ6

Intron

2

chr21:37 685 537

314

SINE (Alu)

KCNJ6

Intron

2

chr21:42 778 574

194

Retroposon (SVA)

LINC01668

Intron

1

chr21:45 622 445

327

SINE (Alu)

LOC107985485

Intron

2

chr22:11 849 283

125

LTR (ERV1)

LOC107984037

Intron

2

chr22:11 860 399

311

SINE (Alu)

LOC107984037

Intron

2

chr22:17 224 399

323

SINE (Alu)

ADA2

Intron

2

chr22:17 567 653

357

SINE (Alu)

SLC25A18

Intron

2

chr22:18 028 745

324

SINE (Alu)

LINC01634

Promoter

2

chr22:18 106 451

286

LTR (ERVL)

TUBA8

Intron

2

chr22:18 801 807

135

SINE (Alu)

GGT3P

Intron

2

chr22:19 373 922

126

SINE (Alu)

HIRA

Intron

2

chr22:22 644 845

318

SINE (Alu)

POM121L1P

Promoter

2

chr22:22 644 845

318

SINE (Alu)

GGTLC2

Intron

2

chr22:24 000 536

318

SINE (Alu)

GSTT4

Intron

2

chr22:25 071 581

97

SINE (Alu)

KIAA1671

Intron

2

chr22:26 553 545

141

SINE (Alu)

TPST2

Intron

2

chr22:26 773 144

905

Retroposon (SVA)

MIATNB

Intron

2

chr22:26 773 195

122

Retroposon (SVA)

MIATNB

Intron

1

chr22:29 676 947

51

LINE (L1)

NF2

Intron

2

chr22:30 071 804

329

SINE (Alu)

HORMAD2-AS1

Intron

2

chr22:30 597 422

160

LTR (ERV1)

PES1

Intron

2

chr22:32 423 938

292

SINE (Alu)

BPIFC

Intron

2

chr22:32 431 424

328

SINE (Alu)

BPIFC

Intron

2

chr22:32 682 036

150

LINE (L2)

SYN3

Intron

2

chr22:33 132 511

315

SINE (Alu)

LINC01640

Intron

2

chr22:34 034 608

341

SINE (Alu)

LINC01643

Intron

2

chr22:40 501 143

130

Retroposon (SVA)

MRTFA

Intron

2

chr22:40 537 218

98

Retroposon (SVA)

MRTFA

Intron

2

chr22:40 537 639

559

Retroposon (SVA)

MRTFA

Intron

1

chr22:41 314 923

314

SINE (Alu)

ZC3H7B

Intron

2

chr22:41 835 230

135

SINE (Alu)

SREBF2-AS1

Promoter

2

chr22:41 835 230

135

SINE (Alu)

SREBF2

Intron

2

chr22:42 818 815

314

SINE (Alu)

ARFGAP3

Intron

2

chr22:43 173 307

327

SINE (Alu)

TTLL12

Intron

2

chr22:43 928 708

1 147

LINE (L1)

PNPLA3

Intron

2

chrX:1 270 917

182

SINE (Alu)

CSF2RA

Intron

2

chrX:1 304 189

333

SINE (Alu)

CSF2RA

Intron

2

chrX:1 432 708

269

Retroposon (SVA)

ASMTL

Intron

1

chrX:6 197 434

113

SINE (Alu)

NLGN4X

Intron

2

chrX:7 941 188

158

SINE (Alu)

LOC107985675

Intron

2

chrX:10 032 829

270

SINE (Alu)

WWC3

Intron

2

chrX:16 964 930

125

Retroposon (SVA)

REPS2

Intron

2

chrX:19 074 340

54

SINE (Alu)

ADGRG2

Intron

2

chrX:24 709 090

129

Retroposon (SVA)

POLA1

Intron

2

chrX:29 333 929

49

Retroposon (SVA)

IL1RAPL1

Intron

2

chrX:34 249 205

395

LINE (L1)

LOC105373153

Intron

2

chrX:40 080 060

337

SINE (Alu)

BCOR

Intron

2

chrX:45 040 274

164

Retroposon (SVA)

KDM6A

Intron

2

chrX:65 457 297

346

Retroposon (SVA)

ZC3H12B

Intron

2

chrX:68 326 721

624

Retroposon (SVA)

OPHN1

Intron

2

chrX:70 350 008

116

Retroposon (SVA)

KIF4A

Intron

2

chrX:72 681 506

126

Retroposon (SVA)

PHKA1

Intron

2

chrX:80 396 883

836

Retroposon (SVA)

TENT5D

Intron

2

chrX:84 080 389

1 362

LINE (L1)

RPS6KA6

Intron

2

chrX:92 170 920

135

SINE (Alu)

PCDH11X

Intron

2

chrX:96 282 339

318

SINE (Alu)

LOC105373294

Intron

2

chrX:100 972 832

761

Retroposon (SVA)

ARL13A

Intron

2

chrX:105 239 587

148

LTR (ERV1)

IL1RAPL2

Intron

2

chrX:107 501 516

133

SINE (Alu)

FRMPD3

Intron

2

chrX:112 314 520

6 057

LINE (L1)

RTL4

Intron

2

chrX:118 888 886

67

LTR (ERV1)

LINC01285

Intron

2

chrX:124 128 746

222

Retroposon (SVA)

STAG2

Intron

2

chrX:128 450 745

54

LTR (ERVL)

LOC107985698

Intron

2

chrX:131 787 913

310

SINE (Alu)

FIRRE

Intron

2

chrX:147 231 728

107

LINE (L1)

MIR506

Promoter

1

chrX:147 231 728

107

LINE (L1)

LOC105373347

Intron

1

chrX:147 992 453

778

Retroposon (SVA)

FMR1NB

Intron

2

chrX:152 833 245

315

SINE (Alu)

NSDHL

Intron

2

2.2 Class II Elements

2.2.1 Distribution

A) Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

  1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 7 rows.

Position

Length

Type

Gene

Annotation

Occurrences

chr1:240 512 502

176

DNA (hAT)

GREM2

Intron

2

chr3:197 847 677

57

DNA (TcMar)

LRCH3

Promoter

2

chr3:197 847 677

57

DNA (TcMar)

LRCH3

Intron

2

chr5:177 779 712

93

DNA (TcMar)

FAM153A

Intron

2

chr8:2 174 153

263

DNA (hAT)

LOC105377781

Intron

2

chr10:35 373 887

112

DNA (TcMar)

CCNY

Intron

2

chr11:41 072 280

87

DNA (TcMar)

LRRC4C

Intron

2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

  • 1 729 TE deletions have been found, adding up to 3 327 occurrences among cases.
  • These deletions have a mean prevalence per sample of 1.9 ± 0.26 (median of 2).
  • The deletion length is in the range of 303-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 504, for a deleted ERVK sequence.

3.1 Allele frequency

  • The mean AF for deletions is 0.77 ± 0.27 (median of 1).
  • With 867 (867 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 52 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.
Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is NADP-retinol dehydrogenase activity (2.347664e-05), and the highest (among the lowest 10) is glucuronosyltransferase activity (0.001573591). The ratio is 67.02796, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0052650

NADP-retinol dehydrogenase activity

10/905

24/20758

2.653e-08

2.348e-05

2.103e-05

10

0.01105

GO:0005096

GTPase activator activity

35/905

304/20758

1.717e-07

7.597e-05

6.804e-05

35

0.03867

GO:0005085

guanyl-nucleotide exchange factor activity

30/905

245/20758

3.453e-07

0.0001018

9.122e-05

30

0.03315

GO:0004033

aldo-keto reductase (NADP) activity

11/905

41/20758

9.667e-07

0.0002109

0.0001889

11

0.01215

GO:0008106

alcohol dehydrogenase (NADP+) activity

10/905

34/20758

1.192e-06

0.0002109

0.0001889

10

0.01105

GO:0005516

calmodulin binding

26/905

210/20758

1.672e-06

0.0002466

0.0002208

26

0.02873

GO:0042578

phosphoric ester hydrolase activity

37/905

396/20758

1.179e-05

0.001491

0.001335

37

0.04088

GO:0046979

TAP2 binding

7/905

20/20758

1.377e-05

0.001523

0.001364

7

0.007735

GO:0022836

gated channel activity

35/905

372/20758

1.74e-05

0.001574

0.001409

35

0.03867

GO:0015020

glucuronosyltransferase activity

9/905

36/20758

1.778e-05

0.001574

0.001409

9

0.009945

GO:0003779

actin binding

41/905

471/20758

2.2e-05

0.001666

0.001492

41

0.0453

GO:0071889

14-3-3 protein binding

9/905

37/20758

2.259e-05

0.001666

0.001492

9

0.009945

GO:0035091

phosphatidylinositol binding

29/905

288/20758

2.609e-05

0.001776

0.001591

29

0.03204

GO:0005543

phospholipid binding

42/905

495/20758

3.198e-05

0.002006

0.001797

42

0.04641

GO:0005216

ion channel activity

41/905

480/20758

3.401e-05

0.002006

0.001797

41

0.0453

GO:0016757

glycosyltransferase activity

28/905

289/20758

7.07e-05

0.00391

0.003502

28

0.03094

GO:0030881

beta-2-microglobulin binding

7/905

26/20758

9.288e-05

0.004759

0.004262

7

0.007735

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

18/905

150/20758

9.679e-05

0.004759

0.004262

18

0.01989

GO:0016758

hexosyltransferase activity

22/905

210/20758

0.0001341

0.006245

0.005594

22

0.02431

GO:0008194

UDP-glycosyltransferase activity

18/905

157/20758

0.0001738

0.007689

0.006887

18

0.01989

GO:0046978

TAP1 binding

7/905

29/20758

0.0001966

0.008284

0.007419

7

0.007735

GO:0070679

inositol 1,4,5 trisphosphate binding

5/905

14/20758

0.0002243

0.009025

0.008083

5

0.005525

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

18/905

162/20758

0.0002575

0.009909

0.008875

18

0.01989

GO:0031267

small GTPase binding

27/905

297/20758

0.0002691

0.009922

0.008887

27

0.02983

GO:0004721

phosphoprotein phosphatase activity

20/905

194/20758

0.0003286

0.01163

0.01042

20

0.0221

GO:0005262

calcium channel activity

15/905

126/20758

0.0003922

0.01335

0.01196

15

0.01657

GO:0022843

voltage-gated cation channel activity

17/905

156/20758

0.0004742

0.01501

0.01345

17

0.01878

GO:0015085

calcium ion transmembrane transporter activity

16/905

142/20758

0.000475

0.01501

0.01345

16

0.01768

GO:0005261

cation channel activity

30/905

360/20758

0.0005576

0.01702

0.01524

30

0.03315

GO:0051020

GTPase binding

28/905

329/20758

0.0006054

0.01786

0.01599

28

0.03094

GO:0008266

poly(U) RNA binding

6/905

26/20758

0.0007344

0.02096

0.01878

6

0.00663

GO:0015278

calcium-release channel activity

5/905

18/20758

0.0008301

0.02236

0.02003

5

0.005525

GO:0005080

protein kinase C binding

9/905

58/20758

0.0008526

0.02236

0.02003

9

0.009945

GO:0008081

phosphoric diester hydrolase activity

12/905

95/20758

0.0008592

0.02236

0.02003

12

0.01326

GO:0015276

ligand-gated ion channel activity

16/905

152/20758

0.001001

0.02442

0.02187

16

0.01768

GO:0022834

ligand-gated channel activity

16/905

152/20758

0.001001

0.02442

0.02187

16

0.01768

GO:0045296

cadherin binding

29/905

357/20758

0.001021

0.02442

0.02187

29

0.03204

GO:0004115

3',5'-cyclic-AMP phosphodiesterase activity

5/905

19/20758

0.001086

0.0253

0.02266

5

0.005525

GO:0004725

protein tyrosine phosphatase activity

13/905

112/20758

0.001188

0.02695

0.02414

13

0.01436

GO:0043225

ATPase-coupled inorganic anion transmembrane transporter activity

4/905

12/20758

0.001341

0.02856

0.02558

4

0.00442

GO:0008187

poly-pyrimidine tract binding

6/905

29/20758

0.001355

0.02856

0.02558

6

0.00663

GO:0045499

chemorepellent activity

6/905

29/20758

0.001355

0.02856

0.02558

6

0.00663

GO:0050811

GABA receptor binding

5/905

20/20758

0.001397

0.02875

0.02575

5

0.005525

GO:0032451

demethylase activity

7/905

40/20758

0.001547

0.03052

0.02734

7

0.007735

GO:0016791

phosphatase activity

25/905

300/20758

0.001552

0.03052

0.02734

25

0.02762

GO:0070717

poly-purine tract binding

6/905

30/20758

0.001632

0.03141

0.02813

6

0.00663

GO:0044325

transmembrane transporter binding

14/905

131/20758

0.001749

0.03178

0.02847

14

0.01547

GO:0005001

transmembrane receptor protein tyrosine phosphatase activity

5/905

21/20758

0.001768

0.03178

0.02847

5

0.005525

GO:0019198

transmembrane receptor protein phosphatase activity

5/905

21/20758

0.001768

0.03178

0.02847

5

0.005525

GO:1901981

phosphatidylinositol phosphate binding

18/905

191/20758

0.001796

0.03178

0.02847

18

0.01989

GO:1902936

phosphatidylinositol bisphosphate binding

13/905

118/20758

0.001916

0.0332

0.02973

13

0.01436

GO:0005217

intracellular ligand-gated ion channel activity

6/905

31/20758

0.001951

0.0332

0.02973

6

0.00663

GO:0046873

metal ion transmembrane transporter activity

34/905

466/20758

0.002459

0.04106

0.03677

34

0.03757

GO:0030215

semaphorin receptor binding

5/905

24/20758

0.003315

0.05361

0.04801

5

0.005525

GO:0034236

protein kinase A catalytic subunit binding

4/905

15/20758

0.003332

0.05361

0.04801

4

0.00442

GO:0005245

voltage-gated calcium channel activity

7/905

46/20758

0.003543

0.056

0.05015

7

0.007735

GO:0004114

3',5'-cyclic-nucleotide phosphodiesterase activity

5/905

26/20758

0.004773

0.07411

0.06638

5

0.005525

GO:0030165

PDZ domain binding

10/905

89/20758

0.005334

0.07945

0.07116

10

0.01105

GO:0030507

spectrin binding

5/905

27/20758

0.005651

0.07945

0.07116

5

0.005525

GO:0046703

natural killer cell lectin-like receptor binding

5/905

27/20758

0.005651

0.07945

0.07116

5

0.005525

GO:0099604

ligand-gated calcium channel activity

5/905

27/20758

0.005651

0.07945

0.07116

5

0.005525

GO:0046977

TAP binding

7/905

50/20758

0.005691

0.07945

0.07116

7

0.007735

GO:0005244

voltage-gated ion channel activity

18/905

213/20758

0.005745

0.07945

0.07116

18

0.01989

GO:0022832

voltage-gated channel activity

18/905

213/20758

0.005745

0.07945

0.07116

18

0.01989

GO:0098631

cell adhesion mediator activity

8/905

64/20758

0.006454

0.08759

0.07845

8

0.00884

GO:0004112

cyclic-nucleotide phosphodiesterase activity

5/905

28/20758

0.006637

0.08759

0.07845

5

0.005525

GO:0003756

protein disulfide isomerase activity

4/905

18/20758

0.00673

0.08759

0.07845

4

0.00442

GO:0016864

intramolecular oxidoreductase activity, transposing S-S bonds

4/905

18/20758

0.00673

0.08759

0.07845

4

0.00442

GO:0043178

alcohol binding

10/905

93/20758

0.007259

0.09224

0.08261

10

0.01105

GO:0005547

phosphatidylinositol-3,4,5-trisphosphate binding

6/905

40/20758

0.007296

0.09224

0.08261

6

0.00663

GO:0004435

phosphatidylinositol phospholipase C activity

5/905

29/20758

0.007738

0.0929

0.0832

5

0.005525

GO:0015431

ABC-type glutathione S-conjugate transporter activity

3/905

10/20758

0.007873

0.0929

0.0832

3

0.003315

GO:0051864

histone H3-methyl-lysine-36 demethylase activity

3/905

10/20758

0.007873

0.0929

0.0832

3

0.003315

GO:0070739

protein-glutamic acid ligase activity

3/905

10/20758

0.007873

0.0929

0.0832

3

0.003315

GO:0070740

tubulin-glutamic acid ligase activity

3/905

10/20758

0.007873

0.0929

0.0832

3

0.003315

GO:0008569

minus-end-directed microtubule motor activity

4/905

19/20758

0.008235

0.0959

0.08589

4

0.00442

GO:0098632

cell-cell adhesion mediator activity

7/905

54/20758

0.008688

0.0998

0.08939

7

0.007735

GO:0032452

histone demethylase activity

5/905

30/20758

0.008959

0.0998

0.08939

5

0.005525

GO:0140457

protein demethylase activity

5/905

30/20758

0.008959

0.0998

0.08939

5

0.005525

GO:0005267

potassium channel activity

12/905

126/20758

0.009022

0.0998

0.08939

12

0.01326

GO:0051018

protein kinase A binding

7/905

55/20758

0.00959

0.1048

0.09385

7

0.007735

GO:0046790

virion binding

3/905

11/20758

0.01048

0.1131

0.1013

3

0.003315

GO:0004629

phospholipase C activity

5/905

32/20758

0.01179

0.1242

0.1112

5

0.005525

GO:0070566

adenylyltransferase activity

5/905

32/20758

0.01179

0.1242

0.1112

5

0.005525

GO:0005154

epidermal growth factor receptor binding

5/905

33/20758

0.01341

0.136

0.1218

5

0.005525

GO:0005249

voltage-gated potassium channel activity

10/905

102/20758

0.01352

0.136

0.1218

10

0.01105

GO:0001851

complement component C3b binding

3/905

12/20758

0.01352

0.136

0.1218

3

0.003315

GO:0008331

high voltage-gated calcium channel activity

3/905

12/20758

0.01352

0.136

0.1218

3

0.003315

GO:0031681

G-protein beta-subunit binding

4/905

22/20758

0.01402

0.1368

0.1225

4

0.00442

GO:0015079

potassium ion transmembrane transporter activity

14/905

166/20758

0.01403

0.1368

0.1225

14

0.01547

GO:0003774

cytoskeletal motor activity

11/905

118/20758

0.01407

0.1368

0.1225

11

0.01215

GO:0016247

channel regulator activity

13/905

150/20758

0.01425

0.137

0.1227

13

0.01436

GO:0016706

2-oxoglutarate-dependent dioxygenase activity

7/905

60/20758

0.01515

0.1442

0.1291

7

0.007735

GO:0008375

acetylglucosaminyltransferase activity

6/905

47/20758

0.0158

0.1487

0.1332

6

0.00663

GO:0008093

cytoskeletal anchor activity

4/905

23/20758

0.01639

0.1527

0.1368

4

0.00442

GO:0099094

ligand-gated cation channel activity

11/905

122/20758

0.01767

0.1629

0.1459

11

0.01215

GO:1904315

transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential

7/905

62/20758

0.01792

0.1635

0.1464

7

0.007735

GO:0005546

phosphatidylinositol-4,5-bisphosphate binding

9/905

92/20758

0.01884

0.1682

0.1507

9

0.009945

GO:0051117

ATPase binding

9/905

92/20758

0.01884

0.1682

0.1507

9

0.009945

GO:0008143

poly(A) binding

4/905

24/20758

0.01901

0.1682

0.1507

4

0.00442

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of natural killer cell activation (4.1123e-10), and the highest (among the lowest 10) is regulation of neuron projection development (6.569717e-05). The ratio is 159757.71, i.e., they differ in 5 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0032815

negative regulation of natural killer cell activation

13/898

20/21069

8.268e-14

4.112e-10

3.834e-10

13

0.01448

GO:0009644

response to high light intensity

10/898

12/21069

1.151e-12

2.862e-09

2.669e-09

10

0.01114

GO:0043321

regulation of natural killer cell degranulation

8/898

10/21069

4.406e-10

5.479e-07

5.108e-07

8

0.008909

GO:0043323

positive regulation of natural killer cell degranulation

8/898

10/21069

4.406e-10

5.479e-07

5.108e-07

8

0.008909

GO:0009642

response to light intensity

11/898

26/21069

3.406e-09

3.389e-06

3.16e-06

11

0.01225

GO:0043320

natural killer cell degranulation

9/898

17/21069

7.968e-09

6.606e-06

6.159e-06

9

0.01002

GO:0032814

regulation of natural killer cell activation

15/898

59/21069

1.707e-08

1.213e-05

1.131e-05

15

0.0167

GO:0042574

retinal metabolic process

11/898

30/21069

2.059e-08

1.28e-05

1.194e-05

11

0.01225

GO:0051056

regulation of small GTPase mediated signal transduction

39/898

343/21069

2.643e-08

1.461e-05

1.362e-05

39

0.04343

GO:0010975

regulation of neuron projection development

46/898

468/21069

1.321e-07

6.57e-05

6.126e-05

46

0.05122

GO:0006063

uronic acid metabolic process

10/898

29/21069

1.801e-07

7.464e-05

6.96e-05

10

0.01114

GO:0019585

glucuronate metabolic process

10/898

29/21069

1.801e-07

7.464e-05

6.96e-05

10

0.01114

GO:0010842

retina layer formation

11/898

37/21069

2.45e-07

9.373e-05

8.74e-05

11

0.01225

GO:0052695

cellular glucuronidation

9/898

24/21069

3.272e-07

0.0001162

0.0001084

9

0.01002

GO:0045920

negative regulation of exocytosis

11/898

44/21069

1.672e-06

0.0005543

0.0005169

11

0.01225

GO:0016358

dendrite development

29/898

262/21069

2.74e-06

0.0008519

0.0007943

29

0.03229

GO:0034329

cell junction assembly

42/898

468/21069

4.858e-06

0.001421

0.001325

42

0.04677

GO:0042461

photoreceptor cell development

12/898

60/21069

7.068e-06

0.001953

0.001821

12

0.01336

GO:0042445

hormone metabolic process

29/898

277/21069

8.207e-06

0.002148

0.002003

29

0.03229

GO:0001523

retinoid metabolic process

16/898

105/21069

9.273e-06

0.002306

0.00215

16

0.01782

GO:0043301

negative regulation of leukocyte degranulation

7/898

20/21069

1.188e-05

0.002814

0.002624

7

0.007795

GO:0016101

diterpenoid metabolic process

16/898

108/21069

1.338e-05

0.003025

0.002821

16

0.01782

GO:0042462

eye photoreceptor cell development

10/898

45/21069

1.543e-05

0.003336

0.003111

10

0.01114

GO:0002725

negative regulation of T cell cytokine production

7/898

21/21069

1.717e-05

0.003558

0.003318

7

0.007795

GO:0032816

positive regulation of natural killer cell activation

9/898

37/21069

1.889e-05

0.003759

0.003505

9

0.01002

GO:0048813

dendrite morphogenesis

19/898

150/21069

2.168e-05

0.004149

0.003868

19

0.02116

GO:0007265

Ras protein signal transduction

35/898

392/21069

3.278e-05

0.005754

0.005365

35

0.03898

GO:0043302

positive regulation of leukocyte degranulation

8/898

31/21069

3.472e-05

0.005754

0.005365

8

0.008909

GO:1903306

negative regulation of regulated secretory pathway

8/898

31/21069

3.472e-05

0.005754

0.005365

8

0.008909

GO:0006081

cellular aldehyde metabolic process

13/898

81/21069

3.592e-05

0.005754

0.005365

13

0.01448

GO:0042572

retinol metabolic process

12/898

70/21069

3.634e-05

0.005754

0.005365

12

0.01336

GO:0002323

natural killer cell activation involved in immune response

9/898

40/21069

3.702e-05

0.005754

0.005365

9

0.01002

GO:1903531

negative regulation of secretion by cell

20/898

171/21069

4.281e-05

0.006453

0.006017

20

0.02227

GO:0002477

antigen processing and presentation of exogenous peptide antigen via MHC class Ib

7/898

24/21069

4.568e-05

0.006615

0.006168

7

0.007795

GO:0034754

cellular hormone metabolic process

20/898

172/21069

4.655e-05

0.006615

0.006168

20

0.02227

GO:0006721

terpenoid metabolic process

16/898

121/21069

5.613e-05

0.007756

0.007232

16

0.01782

GO:0051048

negative regulation of secretion

22/898

203/21069

5.856e-05

0.007872

0.00734

22

0.0245

GO:0046578

regulation of Ras protein signal transduction

23/898

218/21069

6.101e-05

0.007985

0.007446

23

0.02561

GO:0046530

photoreceptor cell differentiation

12/898

74/21069

6.412e-05

0.008178

0.007625

12

0.01336

GO:0099173

postsynapse organization

20/898

183/21069

0.0001113

0.01365

0.01272

20

0.02227

GO:0007605

sensory perception of sound

19/898

169/21069

0.0001125

0.01365

0.01272

19

0.02116

GO:0035795

negative regulation of mitochondrial membrane permeability

7/898

28/21069

0.0001346

0.01594

0.01487

7

0.007795

GO:0017157

regulation of exocytosis

23/898

230/21069

0.0001379

0.01595

0.01487

23

0.02561

GO:0001754

eye photoreceptor cell differentiation

10/898

58/21069

0.0001529

0.01608

0.01499

10

0.01114

GO:1903307

positive regulation of regulated secretory pathway

10/898

58/21069

0.0001529

0.01608

0.01499

10

0.01114

GO:0007269

neurotransmitter secretion

18/898

159/21069

0.0001545

0.01608

0.01499

18

0.02004

GO:0099643

signal release from synapse

18/898

159/21069

0.0001545

0.01608

0.01499

18

0.02004

GO:0045921

positive regulation of exocytosis

13/898

93/21069

0.0001552

0.01608

0.01499

13

0.01448

GO:0097120

receptor localization to synapse

10/898

59/21069

0.0001771

0.01764

0.01645

10

0.01114

GO:0086014

atrial cardiac muscle cell action potential

6/898

21/21069

0.0001844

0.01764

0.01645

6

0.006682

GO:0086026

atrial cardiac muscle cell to AV node cell signaling

6/898

21/21069

0.0001844

0.01764

0.01645

6

0.006682

GO:0086066

atrial cardiac muscle cell to AV node cell communication

6/898

21/21069

0.0001844

0.01764

0.01645

6

0.006682

GO:0035176

social behavior

10/898

60/21069

0.0002045

0.0192

0.0179

10

0.01114

GO:0006887

exocytosis

33/898

397/21069

0.0002113

0.01946

0.01815

33

0.03675

GO:0007034

vacuolar transport

19/898

180/21069

0.000257

0.02203

0.02054

19

0.02116

GO:0045953

negative regulation of natural killer cell mediated cytotoxicity

13/898

98/21069

0.0002642

0.02203

0.02054

13

0.01448

GO:0099175

regulation of postsynapse organization

13/898

98/21069

0.0002642

0.02203

0.02054

13

0.01448

GO:0002476

antigen processing and presentation of endogenous peptide antigen via MHC class Ib

7/898

31/21069

0.0002674

0.02203

0.02054

7

0.007795

GO:1905709

negative regulation of membrane permeability

7/898

31/21069

0.0002674

0.02203

0.02054

7

0.007795

GO:0051058

negative regulation of small GTPase mediated signal transduction

10/898

62/21069

0.0002701

0.02203

0.02054

10

0.01114

GO:0051703

biological process involved in intraspecies interaction between organisms

10/898

62/21069

0.0002701

0.02203

0.02054

10

0.01114

GO:0009812

flavonoid metabolic process

5/898

15/21069

0.0002922

0.02309

0.02153

5

0.005568

GO:0002716

negative regulation of natural killer cell mediated immunity

13/898

99/21069

0.0002925

0.02309

0.02153

13

0.01448

GO:0050954

sensory perception of mechanical stimulus

20/898

197/21069

0.0003009

0.02338

0.0218

20

0.02227

GO:0086012

membrane depolarization during cardiac muscle cell action potential

6/898

23/21069

0.0003189

0.0244

0.02275

6

0.006682

GO:0030101

natural killer cell activation

17/898

155/21069

0.00034

0.02544

0.02372

17

0.01893

GO:0006720

isoprenoid metabolic process

16/898

141/21069

0.0003427

0.02544

0.02372

16

0.01782

GO:0060042

retina morphogenesis in camera-type eye

11/898

76/21069

0.0003603

0.02634

0.02456

11

0.01225

GO:0099054

presynapse assembly

9/898

53/21069

0.0003654

0.02634

0.02456

9

0.01002

GO:0031589

cell-substrate adhesion

33/898

411/21069

0.0003947

0.02805

0.02615

33

0.03675

GO:0002428

antigen processing and presentation of peptide antigen via MHC class Ib

7/898

33/21069

0.0004034

0.02826

0.02635

7

0.007795

GO:0046580

negative regulation of Ras protein signal transduction

9/898

55/21069

0.0004859

0.03357

0.0313

9

0.01002

GO:0042391

regulation of membrane potential

36/898

468/21069

0.0004928

0.03358

0.03131

36

0.04009

GO:0001911

negative regulation of leukocyte mediated cytotoxicity

13/898

105/21069

0.0005223

0.03511

0.03274

13

0.01448

GO:0099172

presynapse organization

9/898

56/21069

0.0005574

0.0353

0.03292

9

0.01002

GO:0010727

negative regulation of hydrogen peroxide metabolic process

4/898

10/21069

0.0005601

0.0353

0.03292

4

0.004454

GO:0099612

protein localization to axon

4/898

10/21069

0.0005601

0.0353

0.03292

4

0.004454

GO:1900122

positive regulation of receptor binding

4/898

10/21069

0.0005601

0.0353

0.03292

4

0.004454

GO:0007158

neuron cell-cell adhesion

5/898

17/21069

0.0005607

0.0353

0.03292

5

0.005568

GO:0035637

multicellular organismal signaling

18/898

177/21069

0.000579

0.036

0.03357

18

0.02004

GO:0071320

cellular response to cAMP

9/898

57/21069

0.0006372

0.03886

0.03624

9

0.01002

GO:0045954

positive regulation of natural killer cell mediated cytotoxicity

8/898

46/21069

0.0006524

0.03886

0.03624

8

0.008909

GO:0099072

regulation of postsynaptic membrane neurotransmitter receptor levels

10/898

69/21069

0.0006533

0.03886

0.03624

10

0.01114

GO:1903532

positive regulation of secretion by cell

26/898

305/21069

0.0006563

0.03886

0.03624

26

0.02895

GO:0031342

negative regulation of cell killing

13/898

108/21069

0.0006854

0.04011

0.0374

13

0.01448

GO:0098742

cell-cell adhesion via plasma-membrane adhesion molecules

25/898

293/21069

0.0008149

0.04549

0.04242

25

0.02784

GO:0071709

membrane assembly

10/898

71/21069

0.0008218

0.04549

0.04242

10

0.01114

GO:0086010

membrane depolarization during action potential

7/898

37/21069

0.0008381

0.04549

0.04242

7

0.007795

GO:0051592

response to calcium ion

16/898

153/21069

0.0008476

0.04549

0.04242

16

0.01782

GO:0006198

cAMP catabolic process

4/898

11/21069

0.0008506

0.04549

0.04242

4

0.004454

GO:0015810

aspartate transmembrane transport

4/898

11/21069

0.0008506

0.04549

0.04242

4

0.004454

GO:0061669

spontaneous neurotransmitter secretion

4/898

11/21069

0.0008506

0.04549

0.04242

4

0.004454

GO:0072697

protein localization to cell cortex

4/898

11/21069

0.0008506

0.04549

0.04242

4

0.004454

GO:0120163

negative regulation of cold-induced thermogenesis

8/898

48/21069

0.0008753

0.04631

0.04319

8

0.008909

GO:0050808

synapse organization

36/898

484/21069

0.0009061

0.04744

0.04423

36

0.04009

GO:0002710

negative regulation of T cell mediated immunity

8/898

49/21069

0.001008

0.05167

0.04817

8

0.008909

GO:0050919

negative chemotaxis

8/898

49/21069

0.001008

0.05167

0.04817

8

0.008909

GO:0034308

primary alcohol metabolic process

14/898

127/21069

0.001048

0.05285

0.04928

14

0.01559

GO:0035249

synaptic transmission, glutamatergic

13/898

113/21069

0.001052

0.05285

0.04928

13

0.01448

GO:1901888

regulation of cell junction assembly

21/898

234/21069

0.001099

0.05468

0.05099

21

0.02339

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is neuron to neuron synapse (3.507641e-07), and the highest (among the lowest 10) is cation channel complex (0.0004858827). The ratio is 1385.212, i.e., they differ in 3 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID

Description

GeneRatio

BgRatio

pvalue

p.adjust

qvalue

Count

GeneRatioCalc

GO:0098984

neuron to neuron synapse

45/940

383/22283

5.856e-10

3.508e-07

2.983e-07

45

0.04787

GO:0032279

asymmetric synapse

42/940

357/22283

2.113e-09

6.327e-07

5.381e-07

42

0.04468

GO:0014069

postsynaptic density

41/940

351/22283

4.053e-09

8.092e-07

6.883e-07

41

0.04362

GO:0099572

postsynaptic specialization

41/940

374/22283

2.523e-08

3.778e-06

3.214e-06

41

0.04362

GO:0032398

MHC class Ib protein complex

7/940

14/22283

6.152e-07

7.37e-05

6.268e-05

7

0.007447

GO:0098858

actin-based cell projection

29/940

253/22283

1.11e-06

9.888e-05

8.41e-05

29

0.03085

GO:0045211

postsynaptic membrane

32/940

296/22283

1.156e-06

9.888e-05

8.41e-05

32

0.03404

GO:0097060

synaptic membrane

39/940

408/22283

1.867e-06

0.0001398

0.0001189

39

0.04149

GO:0034702

ion channel complex

32/940

323/22283

7.405e-06

0.0004859

0.0004133

32

0.03404

GO:0034703

cation channel complex

26/940

236/22283

8.112e-06

0.0004859

0.0004133

26

0.02766

GO:0005938

cell cortex

32/940

326/22283

8.957e-06

0.0004878

0.0004149

32

0.03404

GO:0098978

glutamatergic synapse

33/940

354/22283

1.904e-05

0.0009504

0.0008083

33

0.03511

GO:0019897

extrinsic component of plasma membrane

21/940

180/22283

2.497e-05

0.001151

0.0009786

21

0.02234

GO:0019898

extrinsic component of membrane

31/940

335/22283

3.88e-05

0.00166

0.001412

31

0.03298

GO:0044304

main axon

12/940

74/22283

5.822e-05

0.002194

0.001866

12

0.01277

GO:0031252

cell leading edge

38/940

457/22283

5.861e-05

0.002194

0.001866

38

0.04043

GO:0032045

guanyl-nucleotide exchange factor complex

6/940

18/22283

6.653e-05

0.002344

0.001994

6

0.006383

GO:0098839

postsynaptic density membrane

14/940

100/22283

7.747e-05

0.002527

0.00215

14

0.01489

GO:1990351

transporter complex

37/940

447/22283

8.016e-05

0.002527

0.00215

37

0.03936

GO:0097731

9+0 non-motile cilium

17/940

140/22283

8.742e-05

0.002618

0.002227

17

0.01809

GO:0001750

photoreceptor outer segment

14/940

102/22283

9.643e-05

0.002751

0.002339

14

0.01489

GO:0042383

sarcolemma

17/940

147/22283

0.00016

0.004357

0.003705

17

0.01809

GO:0005891

voltage-gated calcium channel complex

9/940

49/22283

0.0001829

0.004762

0.004051

9

0.009574

GO:0097730

non-motile cilium

19/940

178/22283

0.0001961

0.004895

0.004163

19

0.02021

GO:1902495

transmembrane transporter complex

34/940

421/22283

0.0002438

0.005696

0.004844

34

0.03617

GO:0031256

leading edge membrane

20/940

196/22283

0.0002472

0.005696

0.004844

20

0.02128

GO:0030175

filopodium

15/940

128/22283

0.0003302

0.007064

0.006008

15

0.01596

GO:0099634

postsynaptic specialization membrane

15/940

128/22283

0.0003302

0.007064

0.006008

15

0.01596

GO:0034704

calcium channel complex

11/940

78/22283

0.0004161

0.008594

0.00731

11

0.0117

GO:0030863

cortical cytoskeleton

14/940

120/22283

0.0005394

0.01077

0.009161

14

0.01489

GO:0034705

potassium channel complex

12/940

94/22283

0.0005864

0.01133

0.009637

12

0.01277

GO:0120103

centriolar subdistal appendage

4/940

11/22283

0.0008185

0.01532

0.01303

4

0.004255

GO:0009898

cytoplasmic side of plasma membrane

18/940

187/22283

0.0009833

0.01785

0.01518

18

0.01915

GO:0097733

photoreceptor cell cilium

14/940

128/22283

0.001028

0.01811

0.0154

14

0.01489

GO:0016010

dystrophin-associated glycoprotein complex

5/940

20/22283

0.001207

0.02065

0.01756

5

0.005319

GO:0001726

ruffle

18/940

194/22283

0.001495

0.02487

0.02115

18

0.01915

GO:0099061

integral component of postsynaptic density membrane

8/940

53/22283

0.001599

0.02589

0.02202

8

0.008511

GO:0030864

cortical actin cytoskeleton

11/940

92/22283

0.001686

0.02621

0.02229

11

0.0117

GO:0032587

ruffle membrane

12/940

106/22283

0.001706

0.02621

0.02229

12

0.01277

GO:0009925

basal plasma membrane

23/940

279/22283

0.001783

0.0267

0.02271

23

0.02447

GO:0016342

catenin complex

6/940

32/22283

0.00196

0.02864

0.02436

6

0.006383

GO:0099146

intrinsic component of postsynaptic density membrane

8/940

56/22283

0.002293

0.03271

0.02782

8

0.008511

GO:0016323

basolateral plasma membrane

21/940

254/22283

0.002664

0.03711

0.03156

21

0.02234

GO:0008076

voltage-gated potassium channel complex

10/940

84/22283

0.002784

0.03745

0.03185

10

0.01064

GO:0098562

cytoplasmic side of membrane

19/940

222/22283

0.002835

0.03745

0.03185

19

0.02021

GO:0031307

integral component of mitochondrial outer membrane

5/940

24/22283

0.002876

0.03745

0.03185

5

0.005319

GO:0042612

MHC class I protein complex

7/940

46/22283

0.002954

0.03765

0.03203

7

0.007447

GO:0001917

photoreceptor inner segment

9/940

72/22283

0.003197

0.0399

0.03394

9

0.009574

GO:0031306

intrinsic component of mitochondrial outer membrane

5/940

25/22283

0.003472

0.04159

0.03538

5

0.005319

GO:0090665

glycoprotein complex

5/940

25/22283

0.003472

0.04159

0.03538

5

0.005319

GO:0043034

costamere

4/940

16/22283

0.003813

0.04421

0.0376

4

0.004255

GO:0099240

intrinsic component of synaptic membrane

16/940

179/22283

0.003859

0.04421

0.0376

16

0.01702

GO:0045178

basal part of cell

23/940

297/22283

0.003912

0.04421

0.0376

23

0.02447

GO:0043204

perikaryon

15/940

168/22283

0.005101

0.05659

0.04813

15

0.01596

GO:0031045

dense core granule

5/940

28/22283

0.005786

0.06189

0.05264

5

0.005319

GO:0031527

filopodium membrane

5/940

28/22283

0.005786

0.06189

0.05264

5

0.005319

GO:0099060

integral component of postsynaptic specialization membrane

9/940

80/22283

0.00647

0.06799

0.05783

9

0.009574

GO:0099568

cytoplasmic region

22/940

294/22283

0.006982

0.0721

0.06133

22

0.0234

GO:0030315

T-tubule

7/940

54/22283

0.007313

0.07425

0.06315

7

0.007447

GO:0031253

cell projection membrane

27/940

388/22283

0.007869

0.0768

0.06532

27

0.02872

GO:1905360

GTPase complex

6/940

42/22283

0.007944

0.0768

0.06532

6

0.006383

GO:0031514

motile cilium

20/940

262/22283

0.007954

0.0768

0.06532

20

0.02128

GO:0030658

transport vesicle membrane

24/940

334/22283

0.008115

0.0768

0.06532

24

0.02553

GO:0098948

intrinsic component of postsynaptic specialization membrane

9/940

83/22283

0.008205

0.0768

0.06532

9

0.009574

GO:0005930

axoneme

14/940

161/22283

0.008368

0.07712

0.06559

14

0.01489

GO:0097014

ciliary plasm

14/940

162/22283

0.008816

0.08001

0.06805

14

0.01489

GO:0005614

interstitial matrix

3/940

11/22283

0.009575

0.0856

0.07281

3

0.003191

GO:0032420

stereocilium

7/940

57/22283

0.009797

0.0863

0.0734

7

0.007447

GO:0045177

apical part of cell

31/940

474/22283

0.01092

0.09231

0.07851

31

0.03298

GO:0005902

microvillus

10/940

102/22283

0.01094

0.09231

0.07851

10

0.01064

GO:0031234

extrinsic component of cytoplasmic side of plasma membrane

10/940

102/22283

0.01094

0.09231

0.07851

10

0.01064

GO:0150034

distal axon

21/940

290/22283

0.01171

0.09745

0.08289

21

0.02234

GO:0099699

integral component of synaptic membrane

14/940

168/22283

0.01191

0.0975

0.08293

14

0.01489

GO:0032838

plasma membrane bounded cell projection cytoplasm

19/940

255/22283

0.01211

0.0975

0.08293

19

0.02021

GO:0044224

juxtaparanode region of axon

3/940

12/22283

0.01237

0.0975

0.08293

3

0.003191

GO:1990454

L-type voltage-gated calcium channel complex

3/940

12/22283

0.01237

0.0975

0.08293

3

0.003191

GO:0016529

sarcoplasmic reticulum

8/940

74/22283

0.01256

0.09774

0.08313

8

0.008511

GO:0016528

sarcoplasm

9/940

90/22283

0.01361

0.1045

0.08891

9

0.009574

GO:0030027

lamellipodium

17/940

223/22283

0.01384

0.105

0.08928

17

0.01809

GO:0005770

late endosome

23/940

332/22283

0.01409

0.1055

0.08975

23

0.02447

GO:0035097

histone methyltransferase complex

8/940

76/22283

0.01461

0.1065

0.09054

8

0.008511

GO:0030673

axolemma

4/940

23/22283

0.01468

0.1065

0.09054

4

0.004255

GO:0030018

Z disc

12/940

139/22283

0.01475

0.1065

0.09054

12

0.01277

GO:0005834

heterotrimeric G-protein complex

5/940

35/22283

0.015

0.107

0.09101

5

0.005319

GO:0030426

growth cone

14/940

175/22283

0.01653

0.1165

0.09906

14

0.01489

GO:0043197

dendritic spine

15/940

194/22283

0.01778

0.1239

0.1053

15

0.01596

GO:0005912

adherens junction

15/940

195/22283

0.01854

0.1262

0.1073

15

0.01596

GO:0044309

neuron spine

15/940

195/22283

0.01854

0.1262

0.1073

15

0.01596

GO:1990531

phospholipid-translocating ATPase complex

3/940

14/22283

0.01922

0.1288

0.1095

3

0.003191

GO:0005771

multivesicular body

7/940

65/22283

0.01935

0.1288

0.1095

7

0.007447

GO:0032421

stereocilium bundle

7/940

66/22283

0.02088

0.1375

0.1169

7

0.007447

GO:0030427

site of polarized growth

14/940

181/22283

0.02147

0.1398

0.1189

14

0.01489

GO:0044753

amphisome

3/940

15/22283

0.02329

0.1495

0.1272

3

0.003191

GO:0016324

apical plasma membrane

26/940

406/22283

0.02346

0.1495

0.1272

26

0.02766

GO:0098685

Schaffer collateral - CA1 synapse

8/940

84/22283

0.02526

0.1591

0.1353

8

0.008511

GO:1902710

GABA receptor complex

4/940

27/22283

0.02549

0.1591

0.1353

4

0.004255

GO:0031674

I band

12/940

152/22283

0.02761

0.1664

0.1416

12

0.01277

GO:0097225

sperm midpiece

6/940

55/22283

0.02776

0.1664

0.1416

6

0.006383

GO:0000145

exocyst

3/940

16/22283

0.02778

0.1664

0.1416

3

0.003191

GO:0036128

CatSper complex

3/940

16/22283

0.02778

0.1664

0.1416

3

0.003191

[1] “”


These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted _p_ value.

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

Here it is a barplot of most significantly enriched DO categories.

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was ‘autism spectrum disorder’.

4.3 Network of Cancer Genes

Here it is a barplot of most significantly enriched NCG categories.

Barplot for enriched categories. Values on top have lower p values.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was clear_cell_renal_cancer.