TE analysis report

Note: Insertion ids mentioned in this report are for internal use (not linked to any database) and will change if the pipeline is re-run.

1 General figures

1.1 Filtering criteria

1.1.1 Lax criterion

Note: A “unique” insertion is the merged result after the allele-aware merging from both callers for each patient, and then merged across patients. If we were working with SNPs, a “unique” SNP would be, rs123, for example, defined by its position and alternative(s) allele(s). A unique insertion is defined by its position, length, and inserted sequence.

The analysis has identified:

• 3 649 unique TE insertions, which amount to a total of 6 655 occurrences among all samples.
• With any insertion appearing on 1.8 ± 0.38 samples (median of 2 occurrences/insertion).
• The average insertion count per case is 3 327.5 ± 33.2.

1.1.2 Strict criterion

The stringent criterion (both callers) has left:

• 2 623 TE insertions.
• A total of 4 984 calls across cases.
• A mean prevalence of 1.9 ± 0.3.
• The median prevalence is 2.
• Each sample carries an average of 2 492 ± 15.6 TE insertions.

1.2 Genotyping

• 243 unique insertions that passed the stringent filtering. (9.3% of the total unique insertions), had at least one occurrence genotyped as 0/0.

• These amount to 302 total count (6.1% of filter-passing occurrences).

• 155 of these unique insertions were genotyped as 0/0 for all their occurrences, amounting to 214 insertion counts.

• Of these fully wrong calls, 96 were only found on a single patient each (61.9% of the 155).

• The strict criteria missed calls for 91 unique insertions (3.5%).

• These mean a total of 91 occurrences, out of 4 984 calls that passed the stringent filter.

• 91 unique insertions had more false negative occurrences than positive ones.

The discrepancies between genotyping and the lax filtering is also summarized in the table below.

Note: for true/false poitives/negatives, the genotypes have considered the gold standard.

Criterion	Unique INS with false positives (%)	Total false positives (%)	Unique INS (total) with all false positives	Unique INS with false negatives (%)	Total false negatives (Total positives)	Unique INS with more false negatives than positives
Strict	243 ( 9.3)	302 (6.1)	155 (214)	91 (3.5)	91 (4 984)	91
Lax	612 (16.8)	771 (11.6)	501 (660)	0 (0.0)	0 (6 655)	0

The next sections only take into account insertions that passed the strict criterion on at least one sample, and that were not genotyped as 0/0 on all samples.

1.2.1 Allele frequency

1.2.2 Ubiquitous TE insertions

1.2.2.1 Ubiquitous TE insertions

862 TE insertions were found on all cases in homozygosis.

Click to show table with 862 rows.

Position	Length	Type	AF
chr1:710 578	318	SINE (AluYa5)	1
chr1:1 993 703	146	SINE (FLAM_C)	1
chr1:7 953 092	96	Retroposon (SVA_F)	1
chr1:8 501 387	48	Retroposon (SVA_F)	1
chr1:9 170 364	317	SINE (AluY)	1
chr1:16 424 203	134	SINE (AluYk2)	1
chr1:21 166 094	316	SINE (AluYa5)	1
chr1:26 818 635	97	Retroposon (SVA_F)	1
chr1:28 410 097	124	SINE (AluSc8)	1
chr1:29 873 199	389	LINE (L1MD)	1
chr1:33 052 506	100	Retroposon (SVA_F)	1
chr1:38 485 066	75	SINE (FRAM)	1
chr1:45 330 021	326	SINE (AluYb8)	1
chr1:51 711 458	355	Retroposon (SVA_A)	1
chr1:52 869 965	98	Retroposon (SVA_F)	1
chr1:57 606 184	211	SINE (AluYk2)	1
chr1:63 473 989	117	Retroposon (SVA_F)	1
chr1:64 201 451	47	Retroposon (SVA_F)	1
chr1:64 492 377	346	SINE (AluY)	1
chr1:69 465 246	36	LINE (L1P3)	1
chr1:74 989 508	40	LINE (L1P1)	1
chr1:79 116 389	307	SINE (AluYb9)	1
chr1:80 387 550	320	SINE (AluYa5)	1
chr1:90 891 781	48	Retroposon (SVA_F)	1
chr1:92 701 961	321	SINE (AluYa5)	1
chr1:93 032 654	331	SINE (AluYa5)	1
chr1:94 877 128	299	SINE (AluYa5)	1
chr1:98 512 487	100	Retroposon (SVA_F)	1
chr1:100 528 653	325	SINE (AluYb9)	1
chr1:102 047 084	66	LTR (MER50-int)	1
chr1:103 272 218	97	LTR (HERVL-int)	1
chr1:105 788 296	192	SINE (AluYk2)	1
chr1:108 675 979	159	Retroposon (SVA_A)	1
chr1:112 774 364	177	Retroposon (SVA_F)	1
chr1:112 898 635	48	Retroposon (SVA_F)	1
chr1:117 430 034	174	Retroposon (SVA_F)	1
chr1:120 402 187	30	SINE (Alu)	1
chr1:125 013 224	222	LINE (L1PA3)	1
chr1:147 653 127	306	SINE (AluY)	1
chr1:147 949 446	117	Retroposon (SVA_F)	1
chr1:151 769 292	91	Retroposon (SVA_C)	1
chr1:159 449 991	90	Retroposon (SVA_C)	1
chr1:162 791 517	317	SINE (AluYa5)	1
chr1:163 344 640	327	SINE (AluYa5)	1
chr1:169 993 600	163	SINE (AluSz)	1
chr1:172 571 921	386	Retroposon (SVA_E)	1
chr1:176 396 707	126	Retroposon (SVA_F)	1
chr1:187 615 765	36	Retroposon (SVA_A)	1
chr1:191 119 508	135	SINE (AluSx)	1
chr1:196 184 400	324	SINE (AluYb8)	1
chr1:196 792 226	324	SINE (AluYb8)	1
chr1:196 811 780	153	SINE (AluYa5)	1
chr1:204 010 622	87	LTR (MSTA)	1
chr1:204 269 326	317	SINE (AluYg6)	1
chr1:211 460 647	419	Retroposon (SVA_F)	1
chr1:211 460 849	224	Retroposon (SVA_E)	1
chr1:217 828 482	324	SINE (AluYa5)	1
chr1:219 010 830	100	LINE (L1MCa)	1
chr1:220 466 557	98	Retroposon (SVA_F)	1
chr1:222 697 340	328	SINE (AluYb8)	1
chr1:226 114 913	47	Retroposon (SVA_F)	1
chr1:235 635 571	168	LTR (MSTB)	1
chr1:236 387 105	275	Retroposon (SVA_A)	1
chr1:237 286 555	204	LINE (L1PB)	1
chr1:244 941 424	133	SINE (AluSp)	1
chr1:245 826 009	323	SINE (AluYa5)	1
chr1:246 710 423	53	LTR (MSTB)	1
chr1:248 911 737	126	Retroposon (SVA_F)	1
chr2:1 467 941	331	SINE (AluY)	1
chr2:2 295 544	171	LTR (HERVIP10FH-int)	1
chr2:11 213 564	312	SINE (AluYa5)	1
chr2:11 286 233	325	SINE (AluYa5)	1
chr2:15 023 628	328	SINE (AluYb9)	1
chr2:21 573 937	297	SINE (AluYd8)	1
chr2:27 539 841	492	Retroposon (SVA_F)	1
chr2:31 336 819	318	SINE (AluYa5)	1
chr2:31 727 126	318	SINE (AluYa5)	1
chr2:36 777 087	305	SINE (AluY)	1
chr2:39 079 152	61	LINE (L1M5)	1
chr2:43 183 576	63	SINE (AluSq2)	1
chr2:44 588 252	125	Retroposon (SVA_F)	1
chr2:44 598 695	317	SINE (AluYa5)	1
chr2:47 092 140	329	SINE (AluY)	1
chr2:49 506 341	322	SINE (AluYb8)	1
chr2:50 375 489	328	SINE (AluY)	1
chr2:54 446 445	319	SINE (AluY)	1
chr2:54 889 449	313	SINE (AluYe5)	1
chr2:59 647 122	242	SINE (AluYb8)	1
chr2:60 418 626	63	LTR (HERVH-int)	1
chr2:63 552 086	328	SINE (AluY)	1
chr2:64 512 271	225	Retroposon (SVA_F)	1
chr2:73 898 351	318	SINE (AluYa5)	1
chr2:74 776 087	348	SINE (AluYa5)	1
chr2:75 160 773	315	SINE (AluY)	1
chr2:78 738 283	314	SINE (AluYa5)	1
chr2:81 359 182	87	LINE (L1PREC2)	1
chr2:82 938 173	40	LTR (LTR12C)	1
chr2:84 501 625	313	SINE (AluYg6)	1
chr2:87 180 576	492	LINE (L1HS)	1
chr2:113 348 853	318	SINE (AluYa5)	1
chr2:118 042 423	74	LINE (L1P5)	1
chr2:119 660 918	113	LINE (L1MC4a)	1
chr2:122 573 068	317	SINE (AluYa5)	1
chr2:127 881 317	322	SINE (AluY)	1
chr2:127 981 351	121	LTR (LTR21B)	1
chr2:139 757 713	44	LINE (L1M1)	1
chr2:144 589 184	324	SINE (AluYb8)	1
chr2:151 875 949	48	Retroposon (SVA_F)	1
chr2:152 391 750	325	SINE (AluYg6)	1
chr2:156 369 097	47	Retroposon (SVA_F)	1
chr2:157 653 842	324	SINE (AluYb8)	1
chr2:159 302 486	324	SINE (AluYa5)	1
chr2:161 095 804	298	SINE (AluSx)	1
chr2:168 287 804	284	SINE (AluYa5)	1
chr2:171 866 626	421	Retroposon (SVA_F)	1
chr2:172 657 428	146	SINE (AluYa5)	1
chr2:177 453 984	332	SINE (AluYb8)	1
chr2:177 486 725	339	SINE (AluYb8)	1
chr2:184 896 828	322	SINE (AluYa5)	1
chr2:188 711 105	90	LTR (MER11B)	1
chr2:189 094 694	310	SINE (AluYa5)	1
chr2:191 398 198	300	Retroposon (SVA_E)	1
chr2:191 742 647	48	Retroposon (SVA_F)	1
chr2:197 922 671	126	Retroposon (SVA_F)	1
chr2:200 773 343	968	LINE (L1HS)	1
chr2:202 534 993	49	Retroposon (SVA_F)	1
chr2:207 112 163	322	SINE (AluYb8)	1
chr2:207 607 676	315	SINE (AluY)	1
chr2:214 336 906	323	SINE (AluYb8)	1
chr2:221 579 721	36	SINE (AluSg4)	1
chr2:229 743 294	125	Retroposon (SVA_F)	1
chr2:232 246 907	127	LINE (L1MD3)	1
chr2:233 724 125	50	Retroposon (SVA_F)	1
chr3:4 163 465	316	SINE (AluYa5)	1
chr3:5 311 642	47	LTR (LTR33A_v)	1
chr3:10 070 475	212	Retroposon (SVA_F)	1
chr3:10 241 289	146	SINE (AluSx)	1
chr3:12 095 544	323	SINE (AluY)	1
chr3:18 993 945	320	SINE (AluYb9)	1
chr3:28 798 671	330	SINE (AluY)	1
chr3:32 002 688	94	LTR (LTR65)	1
chr3:34 737 405	42	LINE (L1P4)	1
chr3:35 469 102	65	LTR (LTR12_v)	1
chr3:38 358 205	289	SINE (AluYb8)	1
chr3:46 494 947	323	Retroposon (SVA_E)	1
chr3:48 483 720	48	Retroposon (SVA_F)	1
chr3:50 025 589	268	SINE (AluYa5)	1
chr3:50 084 780	77	Retroposon (SVA_F)	1
chr3:50 841 727	344	SINE (AluYb8)	1
chr3:61 671 974	39	Retroposon (SVA_A)	1
chr3:75 289 657	224	Retroposon (SVA_F)	1
chr3:78 583 006	39	Retroposon (SVA_E)	1
chr3:78 583 231	275	Retroposon (SVA_E)	1
chr3:78 583 374	49	Retroposon (SVA_F)	1
chr3:79 502 727	40	LTR (LTR12C)	1
chr3:79 619 091	52	LTR (HERVH-int)	1
chr3:80 248 694	45	LINE (L1PREC2)	1
chr3:83 254 913	137	SINE (AluY)	1
chr3:83 707 508	254	LINE (L1PA8A)	1
chr3:91 345 077	143	LTR (MLT1D)	1
chr3:91 361 104	243	LINE (L1MEg)	1
chr3:95 745 274	48	Retroposon (SVA_B)	1
chr3:100 458 406	311	SINE (AluYa5)	1
chr3:101 680 712	65	SINE (AluJb)	1
chr3:106 508 513	27	DNA (HSMAR2)	1
chr3:107 335 062	35	LINE (L1HS)	1
chr3:108 026 326	116	Retroposon (SVA_A)	1
chr3:110 694 546	281	SINE (AluSx)	1
chr3:111 444 270	32	LINE (L1P3)	1
chr3:111 507 514	335	SINE (AluYb9)	1
chr3:112 205 623	49	LINE (L1P3)	1
chr3:117 050 498	39	Retroposon (SVA_D)	1
chr3:123 407 764	310	SINE (AluYa5)	1
chr3:124 687 657	316	SINE (AluYa5)	1
chr3:124 922 699	134	SINE (AluJr4)	1
chr3:128 676 362	314	SINE (AluYe5)	1
chr3:129 339 096	48	Retroposon (SVA_F)	1
chr3:130 219 573	317	SINE (AluYe5)	1
chr3:134 199 945	38	LTR (LTR12_v)	1
chr3:136 893 195	105	LINE (L1P5)	1
chr3:141 159 482	50	LINE (L1PA12)	1
chr3:143 086 312	401	Retroposon (SVA_E)	1
chr3:145 526 548	322	SINE (AluY)	1
chr3:151 664 877	77	LTR (HERV9N-int)	1
chr3:157 848 540	37	SINE (Alu)	1
chr3:174 211 587	119	LTR (LTR12C)	1
chr3:174 211 749	119	LTR (LTR12C)	1
chr3:176 373 528	153	LINE (L1HS)	1
chr3:176 425 229	311	SINE (AluYa5)	1
chr3:182 153 132	129	LINE (L1P3)	1
chr3:189 398 051	326	SINE (AluYa5)	1
chr3:197 823 074	32	SINE (Alu)	1
chr3:197 847 677	57	DNA (MADE1)	1
chr4:2 570 071	317	SINE (AluYa5)	1
chr4:4 005 086	80	LTR (HERVH-int)	1
chr4:4 349 007	65	LTR (LTR12)	1
chr4:9 449 339	137	LINE (L1M3)	1
chr4:12 237 653	133	SINE (AluYb8)	1
chr4:13 761 218	146	Retroposon (SVA_F)	1
chr4:15 615 472	237	LTR (LTR12C)	1
chr4:36 323 570	314	SINE (AluYb8)	1
chr4:39 408 924	322	SINE (AluYb8)	1
chr4:42 086 022	315	SINE (AluYa5)	1
chr4:43 846 666	40	LTR (LTR12E)	1
chr4:44 963 877	36	LTR (LTR3B_v)	1
chr4:46 378 044	302	Retroposon (SVA_F)	1
chr4:46 782 419	40	LTR (LTR12E)	1
chr4:48 292 719	45	Retroposon (SVA_F)	1
chr4:52 081 945	147	LINE (L3)	1
chr4:52 465 601	48	Retroposon (SVA_F)	1
chr4:53 237 856	44	Retroposon (SVA_F)	1
chr4:54 325 449	147	Retroposon (SVA_F)	1
chr4:54 993 968	159	LTR (LTR12C)	1
chr4:58 110 152	101	SINE (AluYa5)	1
chr4:63 062 067	184	LTR (LTR12E)	1
chr4:63 697 451	308	SINE (AluY)	1
chr4:66 240 879	318	SINE (AluYa5)	1
chr4:67 098 159	307	SINE (AluY)	1
chr4:69 114 971	40	LTR (LTR12C)	1
chr4:69 762 349	175	Retroposon (SVA_F)	1
chr4:72 104 993	318	SINE (AluYa5)	1
chr4:78 238 350	318	SINE (AluYa5)	1
chr4:81 708 982	318	SINE (AluYa5)	1
chr4:83 182 608	621	Retroposon (SVA_F)	1
chr4:83 185 778	270	Retroposon (SVA_F)	1
chr4:83 186 020	48	Retroposon (SVA_F)	1
chr4:85 549 216	314	SINE (AluY)	1
chr4:106 399 078	64	LINE (L1M4c)	1
chr4:108 077 471	39	Retroposon (SVA_E)	1
chr4:108 659 089	30	SINE (Alu)	1
chr4:110 266 952	136	SINE (AluSq)	1
chr4:110 349 998	31	LINE (L1P4)	1
chr4:115 925 505	45	LINE (L1M2)	1
chr4:134 214 179	412	LTR (HERVL40-int)	1
chr4:138 304 044	331	SINE (AluYi6_4d)	1
chr4:140 017 765	151	SINE (AluYa5)	1
chr4:147 132 785	324	SINE (AluY)	1
chr4:150 660 232	98	Retroposon (SVA_F)	1
chr4:150 953 967	79	Retroposon (SVA_A)	1
chr4:151 214 794	126	Retroposon (SVA_F)	1
chr4:151 362 412	82	SINE (AluY)	1
chr4:157 637 145	140	Retroposon (SVA_A)	1
chr4:159 524 188	126	Retroposon (SVA_F)	1
chr4:163 836 593	223	SINE (AluYd8)	1
chr4:165 269 620	326	SINE (AluYa5)	1
chr4:173 123 062	319	SINE (AluY)	1
chr4:173 228 288	316	SINE (AluY)	1
chr4:174 613 139	327	SINE (AluYe5)	1
chr4:175 181 016	62	LINE (L1PREC2)	1
chr4:179 335 799	315	SINE (AluYi6)	1
chr4:185 056 645	309	SINE (AluYa5)	1
chr4:185 440 757	304	SINE (AluYa5)	1
chr4:186 491 744	54	SINE (AluJb)	1
chr4:189 404 990	71	LTR (MST-int)	1
chr5:1 812 525	312	SINE (AluYa5)	1
chr5:12 319 688	29	LINE (L1PA14)	1
chr5:18 673 483	62	LTR (HERVH-int)	1
chr5:18 673 574	64	LTR (HERVH-int)	1
chr5:20 471 978	280	LINE (L2a)	1
chr5:27 571 886	122	SINE (AluJb)	1
chr5:28 929 589	73	Retroposon (SVA_F)	1
chr5:32 762 455	329	SINE (AluYb8)	1
chr5:40 181 546	307	SINE (AluYa5)	1
chr5:54 087 760	65	SINE (AluYk2)	1
chr5:55 433 459	340	SINE (AluYb8)	1
chr5:55 569 961	320	SINE (AluY)	1
chr5:65 940 643	49	Retroposon (SVA_F)	1
chr5:69 515 538	97	Retroposon (SVA_F)	1
chr5:76 974 446	295	SINE (AluYd8)	1
chr5:77 395 389	313	SINE (AluY)	1
chr5:101 161 653	135	SINE (AluY)	1
chr5:104 113 189	49	SINE (Alu)	1
chr5:108 690 879	311	SINE (AluYa5)	1
chr5:111 450 624	186	SINE (AluYc)	1
chr5:115 404 024	289	SINE (AluYe5)	1
chr5:117 973 461	178	LTR (MST-int)	1
chr5:135 688 029	36	LINE (L1MB3)	1
chr5:137 538 121	127	Retroposon (SVA_F)	1
chr5:137 538 132	153	Retroposon (SVA_F)	1
chr5:140 215 541	327	SINE (AluYb8)	1
chr5:151 982 651	48	LINE (L1PBa)	1
chr5:154 657 244	316	SINE (AluYb8)	1
chr5:155 494 371	117	LINE (L1HS)	1
chr5:159 695 129	316	SINE (AluY)	1
chr5:161 104 485	329	SINE (AluYb8)	1
chr5:170 774 320	310	SINE (AluYa5)	1
chr5:176 306 174	50	Retroposon (SVA_F)	1
chr5:178 458 165	63	LINE (L1MC5)	1
chr6:6 034 535	319	SINE (AluYa5)	1
chr6:6 436 492	30	LTR (LTR9D)	1
chr6:7 441 878	81	LTR (LTR12D)	1
chr6:11 896 739	37	LINE (L1MC)	1
chr6:19 940 521	419	Retroposon (SVA_F)	1
chr6:21 353 449	62	SINE (AluYb8)	1
chr6:23 978 113	322	SINE (AluY)	1
chr6:26 753 983	335	SINE (AluY)	1
chr6:31 853 825	177	Retroposon (SVA_F)	1
chr6:32 501 766	325	SINE (AluY)	1
chr6:32 502 113	206	SINE (AluYc)	1
chr6:32 506 834	120	SINE (AluY)	1
chr6:32 547 334	87	LTR (LTR12C)	1
chr6:32 626 708	128	LINE (L1MEc)	1
chr6:32 720 800	317	SINE (AluYe5)	1
chr6:32 805 657	315	SINE (AluYa5)	1
chr6:34 398 183	177	Retroposon (SVA_A)	1
chr6:36 363 389	101	LTR (LTR12C)	1
chr6:38 964 348	345	Retroposon (SVA_E)	1
chr6:40 202 539	323	SINE (AluY)	1
chr6:43 927 736	317	SINE (AluY)	1
chr6:44 319 523	608	LINE (L2)	1
chr6:48 447 053	44	SINE (AluSc)	1
chr6:48 847 448	34	LINE (L1PB)	1
chr6:49 487 167	101	LINE (L1MC5)	1
chr6:52 969 272	72	SINE (AluSq2)	1
chr6:53 783 945	313	SINE (AluYa5)	1
chr6:57 311 175	36	Retroposon (SVA_A)	1
chr6:62 587 036	43	LTR (HERVH-int)	1
chr6:63 052 338	84	LINE (L1PREC2)	1
chr6:64 312 982	307	LINE (L1P3)	1
chr6:66 605 904	47	LTR (HERVL-int)	1
chr6:67 072 268	200	LINE (L1M4)	1
chr6:67 792 533	318	SINE (AluYa5)	1
chr6:73 601 480	273	Retroposon (SVA_F)	1
chr6:77 679 471	37	DNA (Tigger3c)	1
chr6:82 792 007	51	LINE (L1M1)	1
chr6:96 497 728	68	LINE (L1P3)	1
chr6:96 639 702	98	LINE (L1P1)	1
chr6:97 803 451	305	SINE (AluYa5)	1
chr6:103 902 688	324	SINE (AluY)	1
chr6:107 803 218	36	Retroposon (SVA_D)	1
chr6:114 768 707	105	SINE (AluSc)	1
chr6:120 247 099	319	SINE (AluY)	1
chr6:121 840 523	103	LINE (L2a)	1
chr6:141 014 727	131	LTR (LTR12)	1
chr6:146 455 303	60	LTR (HERVH-int)	1
chr6:146 455 384	61	LTR (HERVH-int)	1
chr6:148 178 700	126	Retroposon (SVA_F)	1
chr6:158 349 074	263	Retroposon (SVA_A)	1
chr6:158 783 393	325	SINE (AluY)	1
chr6:161 283 169	134	SINE (AluSz)	1
chr6:166 711 308	318	SINE (AluYb9)	1
chr6:170 185 527	331	SINE (AluY)	1
chr7:902 456	174	SINE (AluSx)	1
chr7:2 268 713	128	Retroposon (SVA_F)	1
chr7:6 904 663	59	LTR (HERVH-int)	1
chr7:22 813 858	315	SINE (AluYa5)	1
chr7:23 851 398	60	LTR (MSTA)	1
chr7:26 148 327	93	Retroposon (SVA_C)	1
chr7:37 797 033	310	SINE (AluYe5)	1
chr7:51 899 407	47	LTR (MLT1A0)	1
chr7:52 703 768	336	LINE (L1MCa)	1
chr7:52 721 764	354	LINE (L1HS)	1
chr7:56 177 209	323	SINE (AluYb8)	1
chr7:56 211 149	300	SINE (AluYa5)	1
chr7:64 809 491	125	Retroposon (SVA_F)	1
chr7:67 145 044	319	SINE (AluYb8)	1
chr7:71 737 530	106	LTR (LTR12C)	1
chr7:76 937 894	318	SINE (AluYa5)	1
chr7:77 534 007	176	Retroposon (SVA_F)	1
chr7:81 049 372	294	SINE (AluYb8)	1
chr7:83 222 425	314	SINE (AluYb8)	1
chr7:83 460 625	63	LTR (HERVH-int)	1
chr7:83 871 366	186	SINE (AluYc)	1
chr7:84 299 804	69	SINE (AluY)	1
chr7:98 568 472	326	SINE (AluYa5)	1
chr7:109 017 025	51	LINE (L1PREC2)	1
chr7:109 643 280	328	SINE (AluYb8)	1
chr7:114 192 070	49	SINE (AluSx4)	1
chr7:118 443 246	317	SINE (AluYe5)	1
chr7:124 141 305	281	SINE (AluYk2)	1
chr7:125 022 558	167	LTR (THE1-int)	1
chr7:128 552 994	33	SINE (AluSq)	1
chr7:128 569 092	242	SINE (AluYa5)	1
chr7:129 476 156	91	Retroposon (SVA_F)	1
chr7:129 517 319	318	SINE (AluSx)	1
chr7:136 576 160	318	LTR (HERVL-int)	1
chr7:139 101 477	364	Retroposon (SVA_A)	1
chr7:142 659 889	329	SINE (AluYb8)	1
chr7:149 554 812	49	Retroposon (SVA_F)	1
chr7:152 540 441	130	SINE (AluSx)	1
chr7:155 066 495	319	SINE (AluYk2)	1
chr7:155 096 904	73	Retroposon (SVA_B)	1
chr7:157 558 082	339	SINE (AluYb8)	1
chr7:157 656 079	316	SINE (AluY)	1
chr8:2 089 226	45	SINE (Alu)	1
chr8:6 187 437	317	SINE (AluYk2)	1
chr8:6 196 793	91	LINE (L1P2)	1
chr8:9 153 999	48	Retroposon (SVA_F)	1
chr8:9 950 379	327	SINE (AluYb8)	1
chr8:10 468 757	319	SINE (AluYa5)	1
chr8:13 059 194	154	SINE (AluSx4)	1
chr8:16 245 296	275	SINE (AluYa5)	1
chr8:22 922 448	348	SINE (AluYb8)	1
chr8:41 412 938	332	SINE (AluYb8)	1
chr8:54 125 427	225	Retroposon (SVA_F)	1
chr8:54 750 628	41	LTR (LTR12F)	1
chr8:61 752 508	100	Retroposon (SVA_F)	1
chr8:64 686 420	77	Retroposon (SVA_F)	1
chr8:69 245 767	39	Retroposon (SVA_E)	1
chr8:71 002 341	333	SINE (AluYb8)	1
chr8:73 845 055	41	Retroposon (SVA_F)	1
chr8:74 463 097	318	SINE (AluYa5)	1
chr8:86 302 813	115	LINE (L1HS)	1
chr8:86 964 152	73	LTR (MER52-int)	1
chr8:87 744 769	317	SINE (AluYa5)	1
chr8:94 591 076	48	Retroposon (SVA_F)	1
chr8:94 591 439	50	Retroposon (SVA_F)	1
chr8:95 771 303	320	SINE (AluYa5)	1
chr8:97 447 378	31	SINE (Alu)	1
chr8:97 841 152	40	Retroposon (SVA_D)	1
chr8:106 195 649	311	SINE (AluYb9)	1
chr8:116 034 779	275	SINE (AluYg6)	1
chr8:124 877 714	283	SINE (AluYa5)	1
chr8:126 853 220	290	SINE (AluY)	1
chr8:127 025 866	325	SINE (AluYb8)	1
chr8:127 316 510	48	Retroposon (SVA_F)	1
chr8:131 341 813	322	SINE (AluYa5)	1
chr8:138 313 721	313	SINE (AluY)	1
chr8:140 501 180	189	LINE (L2)	1
chr8:140 950 042	69	LTR (MER52A)	1
chr9:848 895	334	SINE (AluY)	1
chr9:2 298 287	191	LINE (L2a)	1
chr9:7 852 522	326	SINE (AluYb9)	1
chr9:15 365 380	391	LTR (LTR12D)	1
chr9:15 365 452	392	LTR (LTR12D)	1
chr9:16 977 542	38	Retroposon (SVA_F)	1
chr9:21 127 606	29	LINE (L1P1)	1
chr9:22 288 707	335	SINE (AluYa5)	1
chr9:26 492 844	36	Retroposon (SVA_F)	1
chr9:31 796 037	43	LINE (L1M3)	1
chr9:32 906 891	65	LTR (LTR12)	1
chr9:34 904 795	103	LINE (L1PB)	1
chr9:34 937 015	46	Retroposon (SVA_F)	1
chr9:35 918 454	31	SINE (Alu)	1
chr9:38 767 762	313	SINE (AluYe5)	1
chr9:42 463 052	191	SINE (AluYb8)	1
chr9:67 083 505	299	SINE (AluY)	1
chr9:70 917 552	318	SINE (AluYa5)	1
chr9:71 929 859	335	SINE (AluYb8)	1
chr9:74 197 755	61	Retroposon (SVA_F)	1
chr9:88 689 440	293	LTR (PABL_A-int)	1
chr9:88 691 152	233	LTR (MER41-int)	1
chr9:97 796 578	39	Retroposon (SVA_F)	1
chr9:107 460 892	61	SINE (AluYa5)	1
chr9:109 499 102	307	SINE (AluYa5)	1
chr9:112 514 852	225	Retroposon (SVA_A)	1
chr9:112 525 962	261	Retroposon (SVA_F)	1
chr9:116 840 550	351	Retroposon (SVA_F)	1
chr9:120 292 891	315	SINE (AluYk2)	1
chr9:123 802 498	79	LINE (L2)	1
chr9:125 458 887	431	Retroposon (SVA_E)	1
chr9:125 577 664	258	Retroposon (SVA_F)	1
chr9:129 514 659	70	LTR (MER52A)	1
chr10:3 526 815	315	SINE (AluYg6)	1
chr10:9 469 017	316	SINE (AluYa5)	1
chr10:14 442 801	327	SINE (AluYa5)	1
chr10:17 950 558	118	LTR (LTR12D)	1
chr10:21 057 584	49	SINE (Alu)	1
chr10:21 737 161	34	SINE (AluJb)	1
chr10:23 486 747	330	SINE (AluYb8)	1
chr10:25 756 463	209	LTR (LTR12C)	1
chr10:27 355 669	391	LINE (L1PA7)	1
chr10:28 813 597	314	SINE (AluY)	1
chr10:30 607 170	126	SINE (AluSx)	1
chr10:32 647 469	54	SINE (FRAM)	1
chr10:35 706 124	317	SINE (AluY)	1
chr10:36 657 456	304	SINE (AluY)	1
chr10:39 479 344	342	LINE (L1P1)	1
chr10:46 876 544	303	SINE (AluYe5)	1
chr10:47 319 408	303	SINE (AluYa5)	1
chr10:52 102 653	275	SINE (AluYk2)	1
chr10:52 707 167	323	SINE (AluY)	1
chr10:53 046 194	313	SINE (AluYe5)	1
chr10:54 167 762	83	LTR (HERVH-int)	1
chr10:54 223 519	324	SINE (AluYa5)	1
chr10:55 002 597	62	LTR (LOR1-int)	1
chr10:56 214 858	302	SINE (AluYa5)	1
chr10:56 724 090	48	SINE (AluYh7)	1
chr10:59 225 142	326	SINE (AluYa5)	1
chr10:62 751 124	324	SINE (AluYa5)	1
chr10:62 928 980	39	Retroposon (SVA_A)	1
chr10:68 235 132	326	SINE (AluYb8)	1
chr10:69 850 403	310	SINE (AluYa5)	1
chr10:69 992 835	494	Retroposon (SVA_E)	1
chr10:70 239 928	110	Retroposon (SVA_A)	1
chr10:70 407 971	341	Retroposon (SVA_E)	1
chr10:74 470 576	142	LINE (L1M3)	1
chr10:75 333 382	180	Retroposon (SVA_F)	1
chr10:75 333 655	87	Retroposon (SVA_F)	1
chr10:83 907 450	208	LTR (LTR69)	1
chr10:87 613 907	326	SINE (AluYb8)	1
chr10:87 655 672	142	SINE (AluYa5)	1
chr10:92 975 822	223	Retroposon (SVA_A)	1
chr10:99 251 497	95	LINE (L1P4)	1
chr10:101 975 999	320	SINE (AluYa5)	1
chr10:102 036 178	141	Retroposon (SVA_F)	1
chr10:104 057 438	194	SINE (AluYb8)	1
chr10:106 131 787	293	SINE (AluY)	1
chr10:107 231 509	320	SINE (AluY)	1
chr10:119 261 069	48	Retroposon (SVA_F)	1
chr10:120 215 119	402	Retroposon (SVA_F)	1
chr10:120 798 700	39	Retroposon (SVA_F)	1
chr10:130 096 568	97	LINE (L1PA7)	1
chr11:696 721	134	SINE (AluJb)	1
chr11:2 238 133	61	LTR (ERVL-B4-int)	1
chr11:3 246 565	142	SINE (AluYa5)	1
chr11:4 283 214	156	Retroposon (SVA_B)	1
chr11:8 865 752	318	SINE (AluYk2)	1
chr11:13 791 469	332	SINE (AluYb9)	1
chr11:19 860 081	223	Retroposon (SVA_E)	1
chr11:22 241 253	124	LINE (L1PA16)	1
chr11:23 336 957	313	SINE (AluYa5)	1
chr11:32 870 496	331	SINE (AluYb8)	1
chr11:37 684 733	318	SINE (AluYa5)	1
chr11:41 072 280	87	DNA (Tigger1)	1
chr11:45 738 460	277	Retroposon (SVA_B)	1
chr11:47 097 418	48	Retroposon (SVA_F)	1
chr11:47 429 529	42	SINE (AluJb)	1
chr11:48 734 293	348	LINE (L1HS)	1
chr11:48 911 556	314	SINE (AluY)	1
chr11:55 553 016	337	SINE (AluY)	1
chr11:56 535 869	316	SINE (AluYg6)	1
chr11:58 006 638	131	SINE (AluYa5)	1
chr11:58 139 863	65	LINE (L1P2)	1
chr11:59 645 329	383	Retroposon (SVA_E)	1
chr11:61 377 728	311	SINE (AluYk12)	1
chr11:63 931 433	308	SINE (AluSx)	1
chr11:65 239 632	130	Retroposon (SVA_F)	1
chr11:74 066 263	48	LINE (L1PA5)	1
chr11:74 353 859	76	Retroposon (SVA_C)	1
chr11:83 133 354	39	Retroposon (SVA_B)	1
chr11:86 110 821	355	Retroposon (SVA_F)	1
chr11:89 175 768	323	SINE (AluY)	1
chr11:90 267 331	186	LINE (L1P3)	1
chr11:91 420 411	175	SINE (AluYc)	1
chr11:93 621 562	51	LTR (THE1C)	1
chr11:93 946 760	454	Retroposon (SVA_E)	1
chr11:95 135 520	41	SINE (Alu)	1
chr11:95 320 834	49	Retroposon (SVA_F)	1
chr11:95 321 129	50	Retroposon (SVA_F)	1
chr11:98 770 105	208	Retroposon (SVA_A)	1
chr11:103 330 537	324	SINE (AluYb8)	1
chr11:106 195 313	136	SINE (AluSx)	1
chr11:106 299 739	313	SINE (AluYa5)	1
chr11:111 211 677	43	LINE (L1MC)	1
chr11:116 130 921	182	LTR (HERVIP10FH-int)	1
chr11:119 253 538	265	Retroposon (SVA_A)	1
chr11:125 863 407	266	Retroposon (SVA_F)	1
chr11:125 863 905	129	Retroposon (SVA_D)	1
chr11:129 889 646	315	SINE (AluYa5)	1
chr11:131 308 282	134	SINE (AluSz)	1
chr11:134 435 747	317	LINE (L1HS)	1
chr12:676 194	133	SINE (AluYk2)	1
chr12:3 768 367	133	SINE (AluJb)	1
chr12:7 451 371	285	SINE (AluYa5)	1
chr12:8 184 249	400	Retroposon (SVA_F)	1
chr12:8 184 716	48	Retroposon (SVA_F)	1
chr12:10 081 587	318	SINE (AluY)	1
chr12:19 340 417	36	Retroposon (SVA_F)	1
chr12:20 755 735	319	SINE (AluYb9)	1
chr12:20 764 123	41	LTR (HERVH-int)	1
chr12:21 970 847	320	SINE (AluYa5)	1
chr12:25 309 998	328	SINE (AluY)	1
chr12:26 784 941	39	Retroposon (SVA_D)	1
chr12:29 411 798	33	LINE (L1P1)	1
chr12:31 650 024	315	SINE (AluSx)	1
chr12:32 098 864	144	SINE (AluSx)	1
chr12:45 025 760	310	SINE (AluYa5)	1
chr12:48 332 461	97	Retroposon (SVA_F)	1
chr12:48 500 573	220	Retroposon (SVA_F)	1
chr12:53 354 590	320	SINE (AluYa5)	1
chr12:54 488 739	39	Retroposon (SVA_D)	1
chr12:57 689 480	313	SINE (AluYa5)	1
chr12:58 825 264	321	SINE (AluYb8)	1
chr12:60 660 033	282	SINE (AluYb8)	1
chr12:63 686 932	118	Retroposon (SVA_A)	1
chr12:63 708 449	76	SINE (AluSg)	1
chr12:64 783 847	188	SINE (AluSp)	1
chr12:77 093 950	174	LINE (L1P1)	1
chr12:78 605 707	304	SINE (AluYb8)	1
chr12:86 811 026	109	LINE (L1MD)	1
chr12:87 477 036	319	SINE (AluY)	1
chr12:87 944 381	306	SINE (AluYa5)	1
chr12:92 118 740	28	DNA (HSMAR2)	1
chr12:93 291 513	133	SINE (AluY)	1
chr12:95 355 501	310	SINE (AluSx)	1
chr12:97 101 565	330	SINE (AluYb8)	1
chr12:99 387 859	177	SINE (AluY)	1
chr12:100 294 427	196	Retroposon (SVA_D)	1
chr12:103 643 940	48	Retroposon (SVA_F)	1
chr12:104 923 205	187	SINE (AluYb9)	1
chr12:106 209 872	286	LINE (L1P3)	1
chr12:124 101 925	48	Retroposon (SVA_F)	1
chr12:125 036 157	162	SINE (AluJb)	1
chr12:131 926 411	79	Retroposon (SVA_A)	1
chr13:18 196 939	197	SINE (AluYb8)	1
chr13:19 032 018	329	SINE (AluYb9)	1
chr13:19 251 656	416	LINE (L1PBa)	1
chr13:19 779 555	48	Retroposon (SVA_F)	1
chr13:21 320 624	286	SINE (AluYb8)	1
chr13:21 614 339	316	SINE (AluYa5)	1
chr13:21 956 209	313	SINE (AluYa5)	1
chr13:22 859 002	47	Retroposon (SVA_F)	1
chr13:22 859 350	39	Retroposon (SVA_C)	1
chr13:25 264 752	135	SINE (AluYa5)	1
chr13:28 990 621	66	LTR (LTR12)	1
chr13:37 215 551	164	SINE (AluSx)	1
chr13:37 607 837	337	SINE (AluYb9)	1
chr13:39 789 563	28	LTR (LTR10F)	1
chr13:40 955 535	98	Retroposon (SVA_F)	1
chr13:42 141 027	29	LINE (L1PA5)	1
chr13:42 476 405	110	Retroposon (SVA_A)	1
chr13:46 521 202	318	SINE (AluYa5)	1
chr13:46 557 525	328	SINE (AluYa5)	1
chr13:49 599 221	314	SINE (AluYk12)	1
chr13:52 080 023	39	Retroposon (SVA_A)	1
chr13:54 937 595	55	LTR (LTR21A)	1
chr13:57 014 879	119	SINE (AluY)	1
chr13:58 046 916	290	SINE (AluYb9)	1
chr13:58 773 222	85	LTR (LTR12C)	1
chr13:58 822 744	315	SINE (AluYg6)	1
chr13:60 037 033	130	LINE (L1MEd)	1
chr13:60 715 401	390	LINE (L1HS)	1
chr13:67 329 321	237	SINE (AluYe5)	1
chr13:78 010 527	313	SINE (AluYa5)	1
chr13:78 077 535	313	SINE (AluYa5)	1
chr13:78 697 449	318	SINE (AluYa5)	1
chr13:86 740 691	291	SINE (AluY)	1
chr13:87 043 983	254	SINE (AluYe5)	1
chr13:89 898 305	322	SINE (AluYe5)	1
chr13:90 291 101	57	LTR (HERVP71A-int)	1
chr13:90 295 387	321	SINE (AluY)	1
chr13:91 861 711	294	SINE (AluYa5)	1
chr13:93 176 152	301	SINE (AluYa5)	1
chr13:94 597 248	144	SINE (AluYa5)	1
chr13:99 242 798	40	Retroposon (SVA_B)	1
chr13:99 430 356	320	SINE (AluY)	1
chr13:107 887 391	62	LTR (MSTA)	1
chr13:108 067 459	316	SINE (AluYb8)	1
chr13:113 357 049	132	SINE (AluSc)	1
chr14:24 473 726	118	LTR (LTR12D)	1
chr14:27 832 046	439	LINE (L1HS)	1
chr14:31 408 945	36	SINE (AluYb8)	1
chr14:34 483 262	316	SINE (AluY)	1
chr14:39 285 662	47	Retroposon (SVA_F)	1
chr14:39 843 742	321	SINE (AluYa5)	1
chr14:42 772 605	66	LINE (L1P3)	1
chr14:43 602 083	513	LINE (L1P1)	1
chr14:50 965 360	326	SINE (AluYb8)	1
chr14:52 837 362	56	LTR (MER51B)	1
chr14:63 139 925	28	LINE (L1P1)	1
chr14:70 397 965	57	LTR (MER52D)	1
chr14:73 353 583	134	SINE (AluSz6)	1
chr14:73 546 923	185	SINE (AluYe5)	1
chr14:82 276 282	195	LTR (LTR8)	1
chr14:85 829 872	39	Retroposon (SVA_E)	1
chr14:86 164 343	314	SINE (AluY)	1
chr14:89 608 202	143	SINE (AluSx)	1
chr14:90 718 834	322	SINE (AluYb9)	1
chr14:91 649 660	317	SINE (AluY)	1
chr14:91 658 708	312	SINE (AluYa5)	1
chr14:98 678 770	53	SINE (Alu)	1
chr14:102 562 101	312	SINE (AluY)	1
chr14:102 676 504	171	Retroposon (SVA_F)	1
chr14:105 111 436	226	Retroposon (SVA_F)	1
chr14:105 112 172	257	Retroposon (SVA_F)	1
chr15:23 103 992	321	SINE (AluYb8)	1
chr15:44 531 316	302	SINE (AluYa5)	1
chr15:45 277 713	311	SINE (AluYa5)	1
chr15:45 290 055	32	SINE (Alu)	1
chr15:45 293 091	48	Retroposon (SVA_F)	1
chr15:47 279 101	87	LINE (L1P1)	1
chr15:50 877 475	60	SINE (MIR3)	1
chr15:56 541 721	296	SINE (AluY)	1
chr15:62 026 065	327	SINE (AluY)	1
chr15:66 375 798	323	SINE (AluYb9)	1
chr15:67 352 555	318	SINE (AluYa5)	1
chr15:71 757 533	133	SINE (AluJr4)	1
chr15:71 769 394	126	Retroposon (SVA_F)	1
chr15:72 347 195	318	SINE (AluYa5)	1
chr15:72 396 768	527	Retroposon (SVA_F)	1
chr15:75 481 586	401	Retroposon (SVA_F)	1
chr15:75 503 575	196	Retroposon (SVA_E)	1
chr15:80 355 807	93	SINE (AluSp)	1
chr15:85 681 718	325	SINE (AluYk2)	1
chr15:88 941 916	118	Retroposon (SVA_A)	1
chr15:88 942 035	67	Retroposon (SVA_B)	1
chr15:89 854 810	78	Retroposon (SVA_F)	1
chr15:93 292 547	315	SINE (AluYa5)	1
chr15:95 584 536	291	SINE (AluYa5)	1
chr16:5 202 288	126	Retroposon (SVA_A)	1
chr16:5 295 016	320	SINE (AluYa5)	1
chr16:10 992 534	314	SINE (AluYa5)	1
chr16:11 940 567	36	SINE (AluSg4)	1
chr16:18 079 930	36	SINE (FRAM)	1
chr16:24 108 962	48	Retroposon (SVA_F)	1
chr16:31 104 754	353	Retroposon (SVA_E)	1
chr16:31 105 127	147	Retroposon (SVA_F)	1
chr16:36 260 385	242	LINE (L1HS)	1
chr16:50 358 349	29	SINE (AluJb)	1
chr16:53 841 055	324	SINE (AluYb8)	1
chr16:69 738 409	99	SINE (AluSc8)	1
chr16:75 574 801	43	SINE (AluYh3)	1
chr16:81 095 628	27	SINE (Alu)	1
chr16:82 131 072	299	SINE (AluY)	1
chr16:82 165 723	36	DNA (Tigger3c)	1
chr16:89 224 966	334	SINE (AluY)	1
chr17:1 276 784	434	SINE (AluSx)	1
chr17:1 690 049	38	Retroposon (SVA_D)	1
chr17:2 448 181	125	Retroposon (SVA_B)	1
chr17:2 548 310	169	SINE (AluSx)	1
chr17:4 274 926	27	SINE (Alu)	1
chr17:4 411 686	259	LINE (L1HS)	1
chr17:5 069 184	325	SINE (AluSx)	1
chr17:16 095 666	104	Retroposon (SVA_F)	1
chr17:16 330 605	317	SINE (AluYe5)	1
chr17:16 699 504	133	SINE (AluYk2)	1
chr17:19 627 935	524	Retroposon (SVA_F)	1
chr17:20 638 094	193	SINE (AluSx)	1
chr17:28 604 078	97	Retroposon (SVA_F)	1
chr17:31 675 941	65	LTR (LTR12)	1
chr17:38 930 729	49	Retroposon (SVA_F)	1
chr17:42 973 221	273	Retroposon (SVA_F)	1
chr17:46 252 889	39	Retroposon (SVA_D)	1
chr17:46 253 241	39	Retroposon (SVA_D)	1
chr17:47 325 026	261	SINE (AluYa5)	1
chr17:49 125 777	224	Retroposon (SVA_F)	1
chr17:52 321 128	321	SINE (AluYa5)	1
chr17:52 953 842	311	SINE (AluYa5)	1
chr17:62 996 973	190	SINE (AluYc)	1
chr17:63 488 528	290	SINE (AluYa5)	1
chr17:67 763 856	42	SINE (AluSz6)	1
chr17:72 700 020	318	SINE (AluYa5)	1
chr17:75 298 385	137	SINE (AluSx3)	1
chr17:76 610 524	41	LTR (HERVH-int)	1
chr18:1 235 775	321	SINE (AluY)	1
chr18:12 980 715	49	Retroposon (SVA_F)	1
chr18:15 779 866	217	LINE (L1P1)	1
chr18:22 091 021	316	SINE (AluY)	1
chr18:29 997 108	32	LTR (THE1D-int)	1
chr18:30 220 884	320	SINE (AluYb8)	1
chr18:35 271 443	40	LTR (LTR12C)	1
chr18:36 077 580	48	Retroposon (SVA_F)	1
chr18:48 997 462	113	SINE (AluYb8)	1
chr18:49 621 064	243	SINE (AluSx)	1
chr18:54 236 358	167	LINE (L1HS)	1
chr18:63 018 865	321	SINE (AluY)	1
chr18:65 820 032	317	SINE (AluY)	1
chr18:68 731 923	315	SINE (AluYk2)	1
chr18:68 905 255	332	SINE (AluYb8)	1
chr18:76 241 968	322	SINE (AluYi6_4d)	1
chr18:76 851 081	311	SINE (AluYk2)	1
chr18:78 280 924	132	LINE (L1P4)	1
chr19:4 965 572	166	SINE (AluJb)	1
chr19:5 761 462	154	LTR (MSTA)	1
chr19:6 923 838	323	SINE (AluYb8)	1
chr19:10 715 006	135	SINE (AluSz)	1
chr19:12 621 713	307	Retroposon (SVA_F)	1
chr19:13 703 694	126	Retroposon (SVA_F)	1
chr19:17 722 278	164	SINE (AluJb)	1
chr19:20 149 557	148	Retroposon (SVA_E)	1
chr19:20 563 164	316	SINE (AluYj4)	1
chr19:20 858 616	38	LTR (HERVIP10FH-int)	1
chr19:23 734 249	312	SINE (AluYb8)	1
chr19:23 768 604	321	SINE (AluYa5)	1
chr19:24 243 583	69	LTR (MER11B)	1
chr19:39 905 477	312	SINE (AluSx)	1
chr19:40 648 243	97	Retroposon (SVA_F)	1
chr19:40 920 013	65	LTR (MER11A)	1
chr19:47 926 362	317	LINE (L1PREC2)	1
chr19:50 585 457	100	SINE (AluJb)	1
chr19:52 720 518	73	Retroposon (SVA_A)	1
chr20:306 267	174	SINE (AluJb)	1
chr20:3 018 857	47	Retroposon (SVA_F)	1
chr20:4 033 198	215	Retroposon (SVA_F)	1
chr20:5 040 476	283	SINE (AluY)	1
chr20:6 665 191	64	DNA (MER33)	1
chr20:15 152 472	41	LTR (HERVH-int)	1
chr20:16 134 623	36	LTR (MER41A)	1
chr20:18 689 894	175	SINE (AluJb)	1
chr20:23 765 577	78	LINE (L1PA15-16)	1
chr20:28 790 008	45	LINE (L1P1)	1
chr20:29 307 454	181	SINE (AluSq)	1
chr20:29 387 580	72	LINE (L1M1)	1
chr20:30 406 410	101	Retroposon (SVA_D)	1
chr20:31 470 609	47	Retroposon (SVA_F)	1
chr20:32 176 933	175	Retroposon (SVA_F)	1
chr20:35 564 380	148	SINE (AluSg)	1
chr20:44 297 116	37	SINE (AluSp)	1
chr20:45 645 644	225	Retroposon (SVA_F)	1
chr20:50 366 198	36	SINE (Alu)	1
chr20:50 685 661	314	SINE (AluY)	1
chr20:51 953 822	316	SINE (AluYa5)	1
chr20:54 108 682	313	SINE (AluYa5)	1
chr20:55 145 299	315	SINE (AluYa5)	1
chr21:5 216 449	222	LINE (L1M3)	1
chr21:10 508 068	56	LINE (L1M3)	1
chr21:15 089 462	276	SINE (AluYa5)	1
chr21:20 142 805	314	SINE (AluY)	1
chr21:24 981 909	324	SINE (AluY)	1
chr21:32 482 930	67	SINE (AluJb)	1
chr21:35 865 629	323	SINE (AluYa5)	1
chr21:37 685 537	314	SINE (AluYa5)	1
chr21:42 965 782	321	SINE (AluYb8)	1
chr21:43 823 144	69	LTR (MLT1D)	1
chr21:44 468 497	134	SINE (AluSz)	1
chr21:44 825 056	126	Retroposon (SVA_F)	1
chr22:11 860 399	311	SINE (AluYa5)	1
chr22:15 830 536	136	SINE (AluSx)	1
chr22:17 567 653	357	SINE (AluYb8)	1
chr22:19 373 922	126	SINE (AluYa5)	1
chr22:22 644 845	318	SINE (AluSx)	1
chr22:23 530 480	320	SINE (AluYb8)	1
chr22:25 277 728	48	Retroposon (SVA_F)	1
chr22:25 345 879	175	SINE (AluSx)	1
chr22:30 597 422	160	LTR (LTR12C)	1
chr22:31 024 654	334	SINE (AluY)	1
chr22:37 220 830	42	LTR (THE1C)	1
chr22:37 786 956	124	Retroposon (SVA_F)	1
chr22:40 501 143	130	Retroposon (SVA_F)	1
chr22:40 744 913	175	Retroposon (SVA_F)	1
chr22:41 552 575	39	SINE (AluJb)	1
chr22:46 509 527	45	DNA (MER20)	1
chrX:881 180	133	SINE (AluJb)	1
chrX:1 057 561	80	SINE (AluSx)	1
chrX:1 390 753	119	SINE (FLAM_C)	1
chrX:3 600 520	38	LINE (L1MB1)	1
chrX:8 978 447	89	LINE (L1P4)	1
chrX:12 963 684	48	Retroposon (SVA_F)	1
chrX:24 709 090	129	Retroposon (SVA_F)	1
chrX:29 333 929	49	Retroposon (SVA_F)	1
chrX:34 249 205	395	LINE (L1P1)	1
chrX:35 009 970	322	SINE (AluYi6)	1
chrX:42 285 660	398	Retroposon (SVA_E)	1
chrX:45 040 274	164	Retroposon (SVA_F)	1
chrX:52 729 421	98	LINE (L1PA4)	1
chrX:53 772 507	127	Retroposon (SVA_F)	1
chrX:65 457 297	346	Retroposon (SVA_F)	1
chrX:66 519 345	52	LINE (L1PREC2)	1
chrX:68 326 721	624	Retroposon (SVA_F)	1
chrX:70 350 008	116	Retroposon (SVA_A)	1
chrX:75 334 747	38	Retroposon (SVA_B)	1
chrX:76 218 142	599	Retroposon (SVA_F)	1
chrX:77 354 184	320	SINE (AluYa5)	1
chrX:78 265 516	201	Retroposon (SVA_F)	1
chrX:80 215 124	116	Retroposon (SVA_A)	1
chrX:88 864 162	47	LTR (LTR12D)	1
chrX:91 279 137	242	SINE (AluYa5)	1
chrX:97 200 437	32	LINE (L1P3)	1
chrX:104 079 600	37	LINE (L1P3)	1
chrX:107 501 516	133	SINE (AluYb8)	1
chrX:115 436 029	295	SINE (AluY)	1
chrX:124 128 746	222	Retroposon (SVA_F)	1
chrX:128 450 745	54	LTR (THE1C)	1
chrX:137 267 661	334	SINE (AluY)	1
chrX:137 875 124	299	SINE (AluY)	1
chrX:138 269 887	51	LTR (LTR7)	1
chrX:146 808 266	319	SINE (AluYb8)	1
chrX:152 833 245	315	SINE (AluY)	1
chrY:11 349 044	100	SINE (AluSq2)	1
chrY:11 384 811	209	SINE (AluYa5)	1
chrY:56 867 597	132	SINE (AluSc)	1

• 2 313 TE insertions were found with an AF ≥ 0.5.

A Manhattan plot of AFs is shown below.

Allele frequency is shown for insertions for each chromosome. Each dot marks a different insertion.

1.2.3 Genome distribution

1. Unique TE insertions occurences on the genome. B) Gene annotations of TE insertions on the genome. A single TE may be annotated more than once.

2 Analysis by TE class

This is the classification of TEs by class (I or II), family (e.g., SINE), subfamily (e.g., Alu) and name (e.g., AluY). SVA, Alu and L1 elements have their own table on the Class I section.

Repeat family	Repeat subfamily	Unique	Total (lax)	Total (strict)
DNA	hAT	4	8	8
	TcMar	7	14	14
LINE	CR1	1	2	2
	L1	278	544	536
	L2	11	22	21
LTR	ERV1	116	221	210
	ERVK	16	30	30
	ERVL	37	74	74
Retroposon	SVA	444	866	804
SINE	Alu	1 549	3 073	3 061
	MIR	5	10	10
Total	-	2 468	4 864	4 770

2.1 Class I Elements

2.1.1 Distribution

1. Unique class I TE insertions occurrences on the genome. B) Gene annotations of class I TE insertions on the genome. A single TE may be annotated more than once.

Detailed classification

Count of SVA elements by name

Name	Unique	Total (lax)	Total (strict)
SVA A	53	103	95
SVA B	14	27	25
SVA C	15	30	26
SVA D	15	30	26
SVA E	66	130	124
SVA F	276	536	498
SVA F1	5	10	10
Total	444	866	804

Click to show table with Alu counts by name.

Count of _Alu_ elements by name

Name	Unique	Total (lax)	Total (strict)
Alu	8	15	15
AluJb	36	71	70
AluJo	3	6	6
AluJr4	3	6	6
AluSc	5	9	9
AluSc8	5	10	9
AluSg	10	20	20
AluSg4	1	1	1
AluSg7	1	2	2
AluSp	9	18	18
AluSq	11	22	22
AluSq2	3	6	6
AluSx	75	145	144
AluSx3	4	8	8
AluSx4	6	11	10
AluSz	8	16	16
AluSz6	4	8	7
AluY	316	627	623
AluYa5	516	1 029	1 029
AluYa8	6	12	12
AluYb8	270	538	537
AluYb9	38	76	76
AluYc	21	41	40
AluYd8	11	22	22
AluYe5	45	89	89
AluYg6	34	67	67
AluYh3	1	1	1
AluYh7	7	14	14
AluYi6	11	22	22
AluYi6 4d	2	4	4
AluYj4	3	6	6
AluYk11	7	14	14
AluYk12	5	10	10
AluYk2	49	98	98
AluYk3	2	4	4
AluYk4	2	4	4
AluYm1	2	4	4
FLAM C	5	9	9
FRAM	4	8	7
Total	1 549	3 073	3 061

Click to show table with L1 counts by name.

Count of L1 elements by name

Name	Unique	Total (lax)	Total (strict)
L1HS	109	214	213
L1M	2	4	4
L1M1	7	14	14
L1M2	2	4	4
L1M2a1	1	2	2
L1M3	7	14	13
L1M4	5	8	8
L1M4b	1	2	2
L1M4c	1	2	2
L1M5	6	11	11
L1MA6	1	2	1
L1MB3	2	4	4
L1MB5	2	3	3
L1MB8	1	2	2
L1MC	2	4	4
L1MC3	1	2	2
L1MC4	2	4	4
L1MC4a	2	4	4
L1MC5	2	4	4
L1MCa	2	4	4
L1MD	3	6	6
L1MD3	2	4	4
L1ME1	1	2	2
L1ME3A	1	2	2
L1MEc	1	2	2
L1MEd	1	2	2
L1MEf	1	2	2
L1MEg	1	2	2
L1P1	28	55	54
L1P2	9	17	17
L1P3	10	20	18
L1P3b	1	2	2
L1P4	9	18	17
L1P5	4	7	7
L1PA10	3	5	5
L1PA11	1	2	2
L1PA12	2	4	4
L1PA13	1	2	2
L1PA15-16	1	2	2
L1PA16	2	4	4
L1PA17	1	2	1
L1PA2	8	16	16
L1PA3	3	6	6
L1PA4	4	8	8
L1PA6	2	4	4
L1PA7	2	4	4
L1PA8	1	2	2
L1PA8A	2	4	4
L1PB	2	4	4
L1PB1	1	2	2
L1PBa	2	4	4
L1PBa1	2	4	4
L1PBb	2	4	4
L1PREC2	6	12	12
Total	278	544	536

2.1.2 Class II TEs on gene sequences

Click to show table with 1319 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr1:1 546 888	121	SINE (Alu)	SSU72	Promoter	2
chr1:1 546 888	121	SINE (Alu)	SSU72	Intron	2
chr1:1 885 904	328	SINE (Alu)	GNB1	Intron	2
chr1:1 993 703	146	SINE (Alu)	CFAP74	Intron	2
chr1:7 803 432	181	SINE (Alu)	PER3	Intron	2
chr1:8 386 566	313	SINE (Alu)	RERE	Intron	2
chr1:8 502 128	581	Retroposon (SVA)	RERE	Intron	2
chr1:9 170 364	317	SINE (Alu)	MIR34AHG	Intron	2
chr1:9 968 550	140	SINE (Alu)	NMNAT1	Intron	2
chr1:15 163 622	135	SINE (Alu)	TMEM51	Intron	2
chr1:16 424 203	134	SINE (Alu)	SPATA21	Intron	2
chr1:16 868 227	314	SINE (Alu)	CROCC	Intron	2
chr1:21 166 094	316	SINE (Alu)	EIF4G3	Intron	2
chr1:26 904 034	320	SINE (Alu)	NUDC	Intron	2
chr1:28 410 097	124	SINE (Alu)	PHACTR4	Intron	2
chr1:29 100 312	322	SINE (Alu)	EPB41	Intron	2
chr1:33 052 506	100	Retroposon (SVA)	AK2	Intron	2
chr1:37 837 431	337	SINE (Alu)	MTF1	Intron	2
chr1:37 967 098	317	SINE (Alu)	SF3A3	Intron	2
chr1:38 485 066	75	SINE (Alu)	LINC01685	Intron	2
chr1:39 234 642	517	Retroposon (SVA)	MACF1	Intron	2
chr1:43 743 238	307	SINE (Alu)	KDM4A	Intron	2
chr1:43 780 660	2 612	Retroposon (SVA)	KDM4A	Intron	2
chr1:44 876 567	399	Retroposon (SVA)	EIF2B3	Promoter	2
chr1:44 876 567	399	Retroposon (SVA)	EIF2B3	Intron	2
chr1:45 330 021	326	SINE (Alu)	MUTYH	Intron	2
chr1:45 497 642	654	Retroposon (SVA)	CCDC163	Intron	2
chr1:46 213 357	335	SINE (Alu)	LURAP1	Intron	2
chr1:50 446 975	333	SINE (Alu)	FAF1	Intron	2
chr1:51 711 458	355	Retroposon (SVA)	OSBPL9	Intron	2
chr1:52 869 965	98	Retroposon (SVA)	ZYG11A	Intron	2
chr1:54 561 779	180	Retroposon (SVA)	ACOT11	Intron	2
chr1:54 561 916	49	Retroposon (SVA)	ACOT11	Intron	1
chr1:57 606 184	211	SINE (Alu)	DAB1	Intron	2
chr1:59 125 792	322	SINE (Alu)	LINC01358	Intron	2
chr1:59 406 189	319	SINE (Alu)	FGGY	Intron	2
chr1:63 473 989	117	Retroposon (SVA)	ITGB3BP	Intron	2
chr1:64 492 377	346	SINE (Alu)	CACHD1	Intron	2
chr1:64 881 268	333	SINE (Alu)	JAK1	Intron	2
chr1:65 590 242	315	SINE (Alu)	LEPR	Intron	2
chr1:69 625 372	325	SINE (Alu)	LRRC7	Intron	2
chr1:69 625 526	325	SINE (Alu)	LRRC7	Intron	2
chr1:74 727 204	3 708	LINE (L1)	CRYZ	Intron	2
chr1:76 390 944	311	SINE (Alu)	ST6GALNAC3	Intron	2
chr1:77 003 278	334	SINE (Alu)	ST6GALNAC5	Intron	2
chr1:77 112 226	328	SINE (Alu)	PIGK	Intron	2
chr1:77 168 628	316	SINE (Alu)	PIGK	Intron	2
chr1:79 116 389	307	SINE (Alu)	ADGRL4	Intron	2
chr1:81 846 355	322	SINE (Alu)	ADGRL2	Intron	2
chr1:83 144 050	1 742	LINE (L1)	LINC01362	Intron	2
chr1:89 905 000	268	SINE (Alu)	LRRC8D	Intron	2
chr1:92 701 961	321	SINE (Alu)	EVI5	Intron	2
chr1:94 877 128	299	SINE (Alu)	SLC44A3	Intron	2
chr1:100 086 086	314	SINE (Alu)	SASS6	Intron	2
chr1:107 599 843	308	SINE (Alu)	VAV3	Intron	2
chr1:110 005 956	218	SINE (Alu)	AHCYL1	Intron	2
chr1:111 581 052	320	SINE (Alu)	RAP1A	Intron	2
chr1:112 193 371	326	SINE (Alu)	LINC02884	Intron	2
chr1:112 449 371	314	SINE (Alu)	CTTNBP2NL	Intron	2
chr1:114 658 770	304	SINE (Alu)	DENND2C	Intron	2
chr1:117 429 536	99	Retroposon (SVA)	MAN1A2	Intron	1
chr1:117 430 034	174	Retroposon (SVA)	MAN1A2	Intron	2
chr1:147 488 600	103	SINE (MIR)	LINC00624	Intron	2
chr1:147 653 127	306	SINE (Alu)	ACP6	Intron	2
chr1:147 949 446	117	Retroposon (SVA)	GPR89B	Intron	2
chr1:151 769 292	91	Retroposon (SVA)	OAZ3	Intron	2
chr1:155 700 905	350	Retroposon (SVA)	DAP3	Intron	2
chr1:155 954 588	320	SINE (Alu)	ARHGEF2	Intron	2
chr1:156 327 929	89	Retroposon (SVA)	CCT3	Intron	2
chr1:156 328 044	142	Retroposon (SVA)	CCT3	Intron	1
chr1:162 791 517	317	SINE (Alu)	HSD17B7	Intron	2
chr1:163 344 640	327	SINE (Alu)	NUF2	Intron	2
chr1:165 690 066	272	SINE (Alu)	ALDH9A1	Intron	2
chr1:167 536 856	234	SINE (Alu)	LOC107985224	Intron	2
chr1:169 993 600	163	SINE (Alu)	KIFAP3	Intron	2
chr1:170 682 342	96	SINE (Alu)	PRRX1	Intron	2
chr1:172 571 921	386	Retroposon (SVA)	SUCO	Intron	1
chr1:179 522 821	353	SINE (Alu)	AXDND1	Intron	2
chr1:180 701 807	281	LINE (L1)	XPR1	Intron	2
chr1:182 451 704	323	SINE (Alu)	RGSL1	Intron	2
chr1:191 848 294	318	SINE (Alu)	LINC02770	Intron	2
chr1:192 857 349	77	Retroposon (SVA)	LOC105371665	Intron	2
chr1:192 857 702	175	Retroposon (SVA)	LOC105371665	Intron	2
chr1:196 792 226	324	SINE (Alu)	CFH	Intron	2
chr1:198 846 183	284	SINE (Alu)	MIR181A1HG	Intron	2
chr1:204 269 326	317	SINE (Alu)	PLEKHA6	Intron	2
chr1:210 745 043	121	SINE (Alu)	KCNH1	Intron	2
chr1:212 592 491	315	SINE (Alu)	ATF3	Intron	2
chr1:215 111 930	317	SINE (Alu)	KCNK2	Intron	2
chr1:216 898 707	330	SINE (Alu)	ESRRG	Intron	2
chr1:217 828 482	324	SINE (Alu)	SPATA17	Intron	2
chr1:219 010 830	100	LINE (L1)	LYPLAL1-DT	Intron	2
chr1:220 781 002	318	SINE (Alu)	MTARC2	Intron	2
chr1:222 697 340	328	SINE (Alu)	AIDA	Intron	2
chr1:223 123 062	330	SINE (Alu)	TLR5	Intron	2
chr1:227 275 238	323	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 314 751	134	SINE (Alu)	CDC42BPA	Intron	2
chr1:227 414 560	315	SINE (Alu)	LINC01641	Intron	2
chr1:230 949 403	304	SINE (Alu)	TTC13	Intron	2
chr1:233 206 358	314	SINE (Alu)	PCNX2	Intron	2
chr1:235 635 571	168	LTR (ERVL)	GNG4	Intron	2
chr1:236 374 894	2 105	Retroposon (SVA)	EDARADD	Intron	2
chr1:236 387 105	275	Retroposon (SVA)	EDARADD	Intron	2
chr1:237 286 555	204	LINE (L1)	RYR2	Intron	2
chr1:240 060 352	54	SINE (Alu)	FMN2	Intron	2
chr1:241 326 644	326	SINE (Alu)	RGS7	Intron	2
chr1:243 214 577	324	SINE (Alu)	CEP170	Intron	2
chr1:245 826 009	323	SINE (Alu)	SMYD3	Intron	2
chr1:246 402 366	165	SINE (Alu)	SMYD3	Intron	2
chr1:246 429 027	318	SINE (Alu)	SMYD3	Intron	2
chr1:246 652 781	133	SINE (Alu)	CNST	Intron	2
chr1:248 911 737	126	Retroposon (SVA)	PGBD2	Intron	2
chr1:434 606	77	LINE (L1)	LOC112268260	Intron	1
chr1:710 578	318	SINE (Alu)	OR4F16	Intron	2
chr2:1 143 706	282	SINE (Alu)	SNTG2	Intron	2
chr2:1 467 941	331	SINE (Alu)	TPO	Intron	2
chr2:2 295 544	171	LTR (ERV1)	MYT1L	Intron	2
chr2:10 685 915	158	LINE (L2)	NOL10	Intron	2
chr2:11 213 564	312	SINE (Alu)	ROCK2	Intron	2
chr2:11 286 233	325	SINE (Alu)	ROCK2	Intron	2
chr2:15 611 912	95	Retroposon (SVA)	DDX1	Intron	2
chr2:21 573 937	297	SINE (Alu)	LOC105374320	Intron	2
chr2:27 539 841	492	Retroposon (SVA)	C2orf16	Intron	2
chr2:27 831 210	323	SINE (Alu)	BABAM2	Intron	2
chr2:31 336 819	318	SINE (Alu)	XDH	Intron	2
chr2:32 140 771	322	SINE (Alu)	SPAST	Intron	2
chr2:34 030 310	317	SINE (Alu)	LINC01317	Intron	2
chr2:36 777 087	305	SINE (Alu)	VIT	Intron	2
chr2:39 079 152	61	LINE (L1)	SOS1	Intron	2
chr2:39 088 182	316	SINE (Alu)	SOS1	Intron	2
chr2:40 386 532	329	SINE (Alu)	SLC8A1	Intron	2
chr2:44 588 991	260	Retroposon (SVA)	CAMKMT	Intron	2
chr2:44 598 695	317	SINE (Alu)	CAMKMT	Intron	2
chr2:46 701 810	291	SINE (Alu)	LINC01118	Intron	2
chr2:47 092 140	329	SINE (Alu)	STPG4	Intron	2
chr2:47 582 848	2 883	Retroposon (SVA)	MSH2	Intron	2
chr2:47 956 016	134	SINE (Alu)	LOC105374591	Intron	2
chr2:50 375 489	328	SINE (Alu)	NRXN1	Intron	2
chr2:51 768 829	311	SINE (Alu)	LOC730100	Intron	2
chr2:54 889 449	313	SINE (Alu)	EML6	Intron	2
chr2:56 146 383	319	SINE (Alu)	LOC105374690	Intron	2
chr2:59 647 122	242	SINE (Alu)	LOC105374754	Intron	2
chr2:60 418 626	63	LTR (ERV1)	MIR4432HG	Intron	2
chr2:63 552 086	328	SINE (Alu)	WDPCP	Intron	2
chr2:64 936 632	315	SINE (Alu)	LINC02245	Intron	2
chr2:65 106 650	306	SINE (Alu)	RAB1A	Intron	2
chr2:65 600 662	534	Retroposon (SVA)	LINC02934	Intron	2
chr2:65 600 671	1 339	Retroposon (SVA)	LINC02934	Intron	2
chr2:65 600 856	97	Retroposon (SVA)	LINC02934	Intron	2
chr2:66 431 844	323	SINE (Alu)	MEIS1-AS3	Intron	2
chr2:69 517 524	325	SINE (Alu)	AAK1	Intron	2
chr2:73 898 351	318	SINE (Alu)	ACTG2	Intron	2
chr2:74 061 581	351	Retroposon (SVA)	TET3	Intron	2
chr2:74 776 087	348	SINE (Alu)	LOC102724497	Intron	2
chr2:75 160 773	315	SINE (Alu)	LOC105374811	Intron	2
chr2:80 541 884	270	SINE (Alu)	CTNNA2	Intron	2
chr2:87 180 576	492	LINE (L1)	LOC102724642	Intron	2
chr2:95 857 174	329	SINE (Alu)	ANKRD36C	Intron	2
chr2:97 965 682	304	SINE (Alu)	TMEM131	Intron	2
chr2:104 078 052	74	LTR (ERV1)	LINC01965	Intron	2
chr2:107 308 150	272	SINE (Alu)	LINC01789	Intron	2
chr2:111 689 844	326	SINE (Alu)	MIR4435-2HG	Intron	2
chr2:111 958 964	326	SINE (Alu)	MERTK	Intron	2
chr2:113 348 853	318	SINE (Alu)	LINC02966	Intron	2
chr2:117 871 796	101	LINE (L1)	LOC101929908	Intron	2
chr2:118 042 423	74	LINE (L1)	LOC102723413	Intron	2
chr2:119 843 892	476	Retroposon (SVA)	PTPN4	Intron	1
chr2:119 843 905	646	Retroposon (SVA)	PTPN4	Intron	1
chr2:119 844 104	224	Retroposon (SVA)	PTPN4	Intron	2
chr2:122 573 068	317	SINE (Alu)	LOC105373595	Intron	2
chr2:127 881 317	322	SINE (Alu)	AMMECR1L	Intron	2
chr2:127 981 351	121	LTR (ERV1)	SAP130	Intron	2
chr2:130 095 311	6 054	LINE (L1)	POTEF	Intron	2
chr2:131 765 910	259	SINE (Alu)	C2orf27A	Intron	2
chr2:137 502 221	304	SINE (Alu)	THSD7B	Intron	2
chr2:141 356 579	332	SINE (Alu)	LRP1B	Intron	2
chr2:147 892 493	298	SINE (Alu)	ACVR2A	Intron	2
chr2:149 907 736	327	SINE (Alu)	MMADHC-DT	Intron	2
chr2:152 391 750	325	SINE (Alu)	FMNL2	Intron	2
chr2:159 251 110	156	SINE (Alu)	WDSUB1	Intron	2
chr2:159 519 808	159	SINE (Alu)	BAZ2B	Intron	2
chr2:162 822 105	310	SINE (Alu)	KCNH7	Intron	2
chr2:171 866 626	421	Retroposon (SVA)	SLC25A12	Intron	2
chr2:174 871 203	318	SINE (Alu)	CHN1	Intron	2
chr2:177 453 984	332	SINE (Alu)	AGPS	Intron	2
chr2:177 486 725	339	SINE (Alu)	AGPS	Intron	2
chr2:181 016 002	310	SINE (Alu)	UBE2E3	Intron	2
chr2:181 397 456	307	SINE (Alu)	LINC01934	Intron	2
chr2:184 896 828	322	SINE (Alu)	ZNF804A	Intron	2
chr2:188 298 290	297	SINE (Alu)	GULP1	Intron	2
chr2:189 094 694	310	SINE (Alu)	COL5A2	Intron	2
chr2:190 430 798	95	Retroposon (SVA)	MFSD6	Intron	1
chr2:191 398 198	300	Retroposon (SVA)	MYO1B	Intron	2
chr2:192 131 159	114	LTR (ERV1)	TMEFF2	Intron	1
chr2:197 922 671	126	Retroposon (SVA)	PLCL1	Intron	1
chr2:200 773 343	968	LINE (L1)	AOX3P-AOX2P	Intron	2
chr2:201 766 720	319	SINE (Alu)	ALS2	Intron	2
chr2:201 777 260	325	SINE (Alu)	ALS2	Intron	2
chr2:207 112 163	322	SINE (Alu)	KLF7	Intron	2
chr2:207 607 676	315	SINE (Alu)	METTL21A	Intron	2
chr2:212 060 586	323	SINE (Alu)	ERBB4	Intron	2
chr2:213 112 341	342	SINE (Alu)	IKZF2	Intron	2
chr2:214 336 906	323	SINE (Alu)	SPAG16	Intron	2
chr2:214 835 480	426	Retroposon (SVA)	SNHG31	Intron	1
chr2:215 683 694	326	SINE (Alu)	LOC102724861	Intron	2
chr2:217 316 033	319	SINE (Alu)	DIRC3-AS1	Intron	2
chr2:217 400 356	318	SINE (Alu)	DIRC3	Intron	2
chr2:218 711 869	326	SINE (Alu)	TTLL4	Intron	2
chr2:228 665 921	50	LINE (L1)	LINC01807	Intron	2
chr2:232 246 907	127	LINE (L1)	DIS3L2	Intron	2
chr2:232 981 165	310	SINE (Alu)	NGEF	Intron	2
chr2:233 724 125	50	Retroposon (SVA)	UGT1A8	Intron	2
chr3:2 129 412	333	SINE (Alu)	CNTN4	Intron	2
chr3:2 772 339	327	SINE (Alu)	CNTN4	Intron	2
chr3:2 920 309	317	SINE (Alu)	CNTN4	Intron	2
chr3:4 163 465	316	SINE (Alu)	SUMF1	Intron	2
chr3:7 088 685	326	SINE (Alu)	GRM7	Intron	2
chr3:7 091 700	330	SINE (Alu)	GRM7	Intron	2
chr3:7 128 489	309	SINE (Alu)	GRM7	Intron	2
chr3:8 440 233	331	Retroposon (SVA)	LOC101927394	Intron	2
chr3:8 440 261	76	Retroposon (SVA)	LOC101927394	Intron	2
chr3:10 070 475	212	Retroposon (SVA)	FANCD2	Intron	2
chr3:10 241 289	146	SINE (Alu)	IRAK2	Intron	2
chr3:11 487 506	529	Retroposon (SVA)	ATG7	Intron	2
chr3:11 487 563	825	Retroposon (SVA)	ATG7	Intron	2
chr3:12 095 544	323	SINE (Alu)	SYN2	Intron	2
chr3:15 742 687	749	Retroposon (SVA)	ANKRD28	Intron	2
chr3:16 980 137	740	Retroposon (SVA)	PLCL2	Intron	2
chr3:25 236 955	323	SINE (Alu)	RARB	Intron	2
chr3:25 249 849	71	LINE (L1)	RARB	Intron	2
chr3:28 798 671	330	SINE (Alu)	ZCWPW2	Intron	2
chr3:29 472 992	49	LTR (ERV1)	ZCWPW2	Intron	2
chr3:29 473 150	159	LTR (ERV1)	ZCWPW2	Intron	2
chr3:31 839 889	326	SINE (Alu)	OSBPL10	Intron	2
chr3:32 002 688	94	LTR (ERV1)	OSBPL10	Intron	2
chr3:32 397 295	251	SINE (Alu)	CMTM7	Intron	2
chr3:37 562 939	320	SINE (Alu)	ITGA9	Intron	2
chr3:37 879 053	341	SINE (Alu)	CTDSPL	Intron	2
chr3:38 358 205	289	SINE (Alu)	XYLB	Intron	2
chr3:40 200 116	321	SINE (Alu)	MYRIP	Intron	2
chr3:41 306 196	61	Retroposon (SVA)	ULK4	Intron	2
chr3:44 298 799	306	SINE (Alu)	TOPAZ1	Intron	2
chr3:45 501 159	317	SINE (Alu)	LARS2	Intron	2
chr3:45 650 999	329	SINE (Alu)	LIMD1	Intron	2
chr3:46 494 947	323	Retroposon (SVA)	RTP3	Intron	2
chr3:46 620 351	321	SINE (Alu)	FAM240A	Intron	2
chr3:47 741 368	318	SINE (Alu)	SMARCC1	Intron	2
chr3:48 330 822	324	SINE (Alu)	SPINK8	Intron	2
chr3:48 708 596	324	SINE (Alu)	IP6K2	Intron	2
chr3:50 025 589	268	SINE (Alu)	RBM6	Intron	2
chr3:50 084 780	77	Retroposon (SVA)	RBM6	Intron	2
chr3:50 841 727	344	SINE (Alu)	DOCK3	Intron	2
chr3:51 249 675	126	Retroposon (SVA)	DOCK3	Intron	2
chr3:53 465 970	334	SINE (Alu)	CACNA1D	Intron	2
chr3:56 584 270	79	Retroposon (SVA)	CCDC66	Intron	2
chr3:57 448 751	487	LTR (ERV1)	DNAH12	Intron	2
chr3:57 578 464	310	SINE (Alu)	ARF4	Intron	2
chr3:59 908 834	108	SINE (Alu)	FHIT	Intron	2
chr3:61 671 741	281	Retroposon (SVA)	PTPRG	Intron	1
chr3:61 671 741	177	Retroposon (SVA)	PTPRG	Intron	1
chr3:63 555 273	312	SINE (Alu)	SYNPR	Intron	2
chr3:79 619 091	52	LTR (ERV1)	ROBO1	Intron	2
chr3:79 762 475	330	SINE (Alu)	ROBO1	Intron	2
chr3:85 527 417	6 052	LINE (L1)	CADM2	Intron	2
chr3:88 428 991	287	SINE (Alu)	CSNKA2IP	Intron	2
chr3:98 836 816	77	Retroposon (SVA)	DCBLD2	Intron	2
chr3:99 007 919	312	SINE (Alu)	LOC105374002	Intron	2
chr3:99 936 539	324	SINE (Alu)	CMSS1	Intron	2
chr3:100 691 697	327	SINE (Alu)	ADGRG7	Intron	2
chr3:101 439 979	731	Retroposon (SVA)	SENP7	Intron	2
chr3:107 287 946	315	SINE (Alu)	DUBR	Intron	2
chr3:111 507 514	335	SINE (Alu)	LOC105374039	Intron	2
chr3:112 205 623	49	LINE (L1)	SLC9C1	Intron	2
chr3:115 664 229	329	SINE (Alu)	GAP43	Intron	2
chr3:119 025 405	319	SINE (Alu)	IGSF11	Intron	2
chr3:121 849 956	314	SINE (Alu)	EAF2	Intron	2
chr3:123 080 894	326	SINE (Alu)	PDIA5	Intron	2
chr3:123 407 764	310	SINE (Alu)	ADCY5	Intron	2
chr3:123 871 864	6 047	LINE (L1)	MYLK	Intron	2
chr3:124 687 657	316	SINE (Alu)	KALRN	Intron	2
chr3:124 922 699	134	SINE (Alu)	MUC13	Intron	2
chr3:128 676 362	314	SINE (Alu)	RPN1	Intron	2
chr3:128 955 332	177	Retroposon (SVA)	CFAP92	Intron	1
chr3:130 090 880	300	SINE (Alu)	ALG1L2	Intron	1
chr3:130 219 573	317	SINE (Alu)	COL6A4P2	Intron	2
chr3:136 893 195	105	LINE (L1)	NCK1	Intron	2
chr3:142 741 180	314	SINE (Alu)	TRPC1	Intron	2
chr3:149 380 188	682	Retroposon (SVA)	TM4SF1-AS1	Intron	2
chr3:149 380 313	1 377	Retroposon (SVA)	TM4SF1-AS1	Intron	2
chr3:150 820 821	146	Retroposon (SVA)	SIAH2-AS1	Intron	2
chr3:151 820 689	171	SINE (Alu)	AADAC	Intron	2
chr3:155 668 083	178	SINE (Alu)	PLCH1	Intron	2
chr3:156 100 578	337	SINE (Alu)	KCNAB1	Intron	2
chr3:157 436 295	323	SINE (Alu)	PTX3	Promoter	2
chr3:157 436 295	323	SINE (Alu)	VEPH1	Intron	2
chr3:158 245 130	339	SINE (Alu)	RSRC1	Intron	2
chr3:160 546 055	161	SINE (Alu)	KPNA4	Intron	2
chr3:168 481 273	319	SINE (Alu)	EGFEM1P	Intron	2
chr3:171 908 582	313	SINE (Alu)	TMEM212	Intron	2
chr3:174 692 945	322	SINE (Alu)	NAALADL2	Intron	2
chr3:178 393 247	333	SINE (Alu)	KCNMB2	Intron	2
chr3:179 121 485	67	Retroposon (SVA)	PIK3CA-DT	Intron	2
chr3:181 475 037	3 202	LINE (L1)	SOX2-OT	Intron	2
chr3:182 153 132	129	LINE (L1)	LOC105374243	Intron	2
chr3:183 870 209	304	SINE (Alu)	MAP6D1	Intron	2
chr3:186 654 333	6 051	LINE (L1)	HRG-AS1	Intron	2
chr3:187 240 158	329	SINE (Alu)	MASP1	Intron	2
chr3:191 281 660	322	SINE (Alu)	UTS2B	Intron	2
chr3:191 390 410	77	LTR (ERV1)	CCDC50	Intron	2
chr3:196 874 212	322	SINE (Alu)	SENP5	Intron	2
chr4:1 308 027	318	SINE (Alu)	MAEA	Intron	2
chr4:2 570 071	317	SINE (Alu)	FAM193A	Intron	2
chr4:4 349 007	65	LTR (ERV1)	NSG1	Intron	2
chr4:4 357 809	133	LINE (L1)	NSG1	Intron	2
chr4:9 449 339	137	LINE (L1)	DEFB131A	Intron	2
chr4:12 237 653	133	SINE (Alu)	LINC02270	Intron	2
chr4:13 761 218	146	Retroposon (SVA)	LOC107986182	Intron	2
chr4:14 955 276	114	LTR (ERVL)	CPEB2-DT	Intron	2
chr4:15 615 472	237	LTR (ERV1)	FBXL5	Intron	2
chr4:19 364 519	324	SINE (Alu)	LINC02438	Intron	2
chr4:25 808 835	135	SINE (Alu)	SEL1L3	Intron	2
chr4:36 323 570	314	SINE (Alu)	DTHD1	Intron	2
chr4:39 408 924	322	SINE (Alu)	KLB	Intron	2
chr4:40 879 175	322	SINE (Alu)	APBB2	Intron	2
chr4:41 049 360	133	Retroposon (SVA)	APBB2	Intron	2
chr4:42 086 022	315	SINE (Alu)	SLC30A9	Intron	2
chr4:47 005 771	423	LINE (L1)	GABRB1	Intron	2
chr4:52 081 945	147	LINE (CR1)	SPATA18	Intron	2
chr4:52 737 160	168	SINE (Alu)	RASL11B	Intron	2
chr4:53 549 475	320	SINE (Alu)	PDGFRA	Intron	2
chr4:54 154 775	159	LTR (ERV1)	PDGFRA	Intron	2
chr4:55 505 776	318	SINE (Alu)	CLOCK	Intron	2
chr4:64 351 027	290	SINE (Alu)	TECRL	Intron	2
chr4:68 079 050	325	SINE (Alu)	UBA6-DT	Intron	2
chr4:69 611 287	310	SINE (Alu)	UGT2A2	Intron	2
chr4:69 762 349	175	Retroposon (SVA)	SULT1B1	Intron	2
chr4:72 104 993	318	SINE (Alu)	NPFFR2	Intron	2
chr4:75 861 612	314	SINE (Alu)	PPEF2	Intron	2
chr4:76 072 654	316	SINE (Alu)	ART3	Intron	2
chr4:76 496 764	2 059	Retroposon (SVA)	SHROOM3	Intron	2
chr4:78 238 350	318	SINE (Alu)	FRAS1	Intron	2
chr4:78 401 811	325	SINE (Alu)	FRAS1	Intron	2
chr4:81 708 982	318	SINE (Alu)	RASGEF1B	Intron	2
chr4:85 549 216	314	SINE (Alu)	ARHGAP24	Intron	2
chr4:85 663 335	318	SINE (Alu)	ARHGAP24	Intron	2
chr4:86 021 227	160	LTR (ERV1)	MAPK10	Intron	2
chr4:87 308 501	144	SINE (Alu)	HSD17B13	Intron	2
chr4:89 042 102	214	SINE (Alu)	FAM13A	Intron	2
chr4:91 168 070	150	Retroposon (SVA)	CCSER1	Intron	1
chr4:92 442 128	325	SINE (Alu)	GRID2	Intron	2
chr4:94 492 114	324	SINE (Alu)	PDLIM5	Intron	2
chr4:101 120 577	322	SINE (Alu)	PPP3CA	Intron	2
chr4:102 422 587	1 888	LINE (L1)	SLC39A8	Intron	2
chr4:109 597 355	194	Retroposon (SVA)	MCUB	Intron	2
chr4:113 097 092	312	SINE (Alu)	ANK2	Intron	2
chr4:114 628 766	319	SINE (Alu)	UGT8	Intron	2
chr4:123 709 543	129	LINE (L1)	LINC01091	Intron	2
chr4:126 675 052	476	LINE (L1)	LOC105377411	Intron	2
chr4:128 286 079	326	SINE (Alu)	PGRMC2	Intron	2
chr4:134 214 179	412	LTR (ERVL)	PABPC4L	Intron	2
chr4:136 885 360	137	SINE (Alu)	LINC02511	Intron	2
chr4:138 304 044	331	SINE (Alu)	LINC00498	Intron	2
chr4:139 289 130	294	SINE (Alu)	MGARP	Intron	2
chr4:140 017 765	151	SINE (Alu)	MAML3	Intron	2
chr4:145 892 669	318	SINE (Alu)	ZNF827	Promoter	2
chr4:145 892 669	318	SINE (Alu)	ZNF827	Intron	2
chr4:146 304 128	6 041	LINE (L1)	SLC10A7	Intron	2
chr4:147 132 785	324	SINE (Alu)	LOC105377476	Intron	2
chr4:149 818 787	323	SINE (Alu)	IQCM	Intron	2
chr4:150 372 749	318	SINE (Alu)	LRBA	Intron	2
chr4:150 660 232	98	Retroposon (SVA)	LRBA	Intron	2
chr4:150 953 967	79	Retroposon (SVA)	LRBA	Intron	2
chr4:151 214 794	126	Retroposon (SVA)	SH3D19	Intron	2
chr4:153 979 895	322	SINE (Alu)	LOC101927947	Intron	2
chr4:163 836 593	223	SINE (Alu)	MARCHF1	Intron	2
chr4:164 310 574	364	LINE (L1)	MARCHF1	Intron	2
chr4:165 269 620	326	SINE (Alu)	KLHL2	Intron	2
chr4:169 913 439	300	SINE (Alu)	LOC105377530	Intron	2
chr4:173 123 062	319	SINE (Alu)	GALNT7-DT	Intron	2
chr4:173 228 288	316	SINE (Alu)	GALNT7	Intron	2
chr4:173 865 543	317	SINE (Alu)	LINC02269	Intron	2
chr4:181 070 771	321	SINE (Alu)	LINC00290	Intron	2
chr4:185 056 645	309	SINE (Alu)	LINC02436	Intron	2
chr4:185 440 757	304	SINE (Alu)	C4orf47	Intron	2
chr4:186 491 744	54	SINE (Alu)	F11-AS1	Intron	2
chr5:1 812 525	312	SINE (Alu)	NDUFS6	Intron	2
chr5:7 845 925	312	SINE (Alu)	C5orf49	Intron	2
chr5:10 634 867	319	SINE (Alu)	ANKRD33B	Intron	2
chr5:11 162 726	323	SINE (Alu)	CTNND2	Intron	2
chr5:13 827 484	618	LTR (ERVL)	DNAH5	Intron	2
chr5:16 716 503	310	SINE (Alu)	MYO10	Intron	2
chr5:20 471 978	280	LINE (L2)	CDH18	Intron	2
chr5:20 834 954	244	LINE (L1)	LINC02241	Intron	2
chr5:25 233 803	294	SINE (Alu)	LINC02211	Intron	2
chr5:32 762 455	329	SINE (Alu)	NPR3	Intron	2
chr5:32 974 396	1 060	LINE (L1)	LOC105374715	Intron	2
chr5:33 633 228	5 228	LINE (L1)	ADAMTS12	Intron	2
chr5:33 797 437	6 058	LINE (L1)	ADAMTS12	Intron	2
chr5:34 113 145	320	SINE (Alu)	C1QTNF3-AMACR	Intron	2
chr5:37 688 692	281	SINE (Alu)	WDR70	Intron	2
chr5:39 292 866	335	SINE (Alu)	C9	Intron	2
chr5:39 334 533	77	Retroposon (SVA)	C9	Intron	2
chr5:54 087 760	65	SINE (Alu)	ARL15	Intron	2
chr5:55 433 459	340	SINE (Alu)	PLPP1	Intron	2
chr5:55 695 934	98	Retroposon (SVA)	SLC38A9	Intron	2
chr5:55 871 816	328	SINE (Alu)	IL31RA	Intron	2
chr5:62 339 522	316	SINE (Alu)	KIF2A	Intron	2
chr5:62 561 274	324	SINE (Alu)	IPO11	Intron	2
chr5:65 940 643	49	Retroposon (SVA)	ERBIN	Intron	2
chr5:68 967 632	650	LINE (L1)	LOC107984116	Intron	2
chr5:69 515 538	97	Retroposon (SVA)	OCLN	Intron	2
chr5:76 172 419	101	Retroposon (SVA)	SV2C	Intron	2
chr5:76 974 446	295	SINE (Alu)	CRHBP	Intron	2
chr5:77 395 389	313	SINE (Alu)	PDE8B	Intron	2
chr5:77 457 767	325	SINE (Alu)	WDR41	Intron	2
chr5:77 794 945	123	Retroposon (SVA)	TBCA	Intron	2
chr5:79 147 046	300	SINE (Alu)	DMGDH	Intron	2
chr5:82 140 242	223	Retroposon (SVA)	ATG10	Intron	2
chr5:87 076 864	294	SINE (Alu)	LOC101929380	Intron	2
chr5:90 154 950	6 070	LINE (L1)	LINC01339	Intron	2
chr5:90 702 006	153	SINE (Alu)	ADGRV1	Intron	2
chr5:95 658 504	323	SINE (Alu)	LOC105379090	Intron	2
chr5:104 113 189	49	SINE (Alu)	NIHCOLE	Intron	2
chr5:104 402 721	291	SINE (Alu)	NIHCOLE	Intron	2
chr5:109 282 197	167	LINE (L1)	LOC285638	Intron	2
chr5:111 450 624	186	SINE (Alu)	CAMK4	Intron	2
chr5:115 404 024	289	SINE (Alu)	LOC105379130	Intron	2
chr5:117 973 461	178	LTR (ERVL)	LINC02147	Intron	2
chr5:131 517 547	328	SINE (Alu)	RAPGEF6	Intron	2
chr5:137 059 137	234	LINE (L2)	SPOCK1	Intron	2
chr5:140 215 541	327	SINE (Alu)	CYSTM1	Intron	2
chr5:142 379 076	313	SINE (Alu)	SPRY4-AS1	Intron	2
chr5:146 990 048	317	SINE (Alu)	PPP2R2B	Intron	2
chr5:147 258 151	294	SINE (Alu)	STK32A	Intron	2
chr5:155 906 881	2 494	LINE (L1)	SGCD	Intron	2
chr5:157 139 715	333	SINE (Alu)	HAVCR2	Intron	2
chr5:158 376 055	254	SINE (Alu)	LINC02227	Intron	2
chr5:159 695 129	316	SINE (Alu)	LOC105377684	Intron	2
chr5:162 530 740	5 478	LINE (L1)	LOC105377697	Intron	2
chr5:167 748 593	321	SINE (Alu)	TENM2	Intron	2
chr5:170 774 320	310	SINE (Alu)	GABRP	Intron	2
chr5:173 116 811	118	LINE (L1)	CREBRF	Intron	1
chr5:176 305 313	479	Retroposon (SVA)	SIMC1	Intron	2
chr5:176 306 174	50	Retroposon (SVA)	SIMC1	Intron	2
chr5:177 025 394	330	SINE (Alu)	ZNF346	Intron	2
chr5:177 635 730	1 229	LINE (L1)	LOC202181	Intron	2
chr5:177 736 083	170	SINE (Alu)	FAM153A	Intron	2
chr5:178 458 165	63	LINE (L1)	COL23A1	Intron	2
chr5:179 942 167	147	SINE (Alu)	RNF130	Intron	2
chr5:180 922 590	321	SINE (Alu)	BTNL8	Intron	2
chr5:180 941 894	122	SINE (Alu)	BTNL8	Intron	2
chr6:2 773 768	292	SINE (Alu)	WRNIP1	Intron	2
chr6:2 972 359	305	SINE (Alu)	SERPINB6	Promoter	2
chr6:13 190 782	6 055	LINE (L1)	PHACTR1	Intron	2
chr6:15 415 597	48	Retroposon (SVA)	JARID2	Intron	1
chr6:15 415 618	50	Retroposon (SVA)	JARID2	Intron	1
chr6:16 417 452	157	LINE (L1)	ATXN1	Intron	2
chr6:17 416 151	320	SINE (Alu)	CAP2	Intron	2
chr6:19 346 203	318	SINE (Alu)	LOC107986575	Intron	2
chr6:20 168 888	314	SINE (Alu)	MBOAT1	Intron	2
chr6:20 887 674	314	SINE (Alu)	CDKAL1	Intron	2
chr6:27 484 973	87	Retroposon (SVA)	LOC105375001	Intron	1
chr6:27 485 004	431	Retroposon (SVA)	LOC105375001	Intron	1
chr6:29 731 770	2 300	Retroposon (SVA)	HLA-F	Intron	2
chr6:29 977 733	316	SINE (Alu)	HCG9	Intron	2
chr6:29 986 044	327	SINE (Alu)	POLR1HASP	Intron	2
chr6:30 786 922	310	SINE (Alu)	HCG20	Intron	2
chr6:30 815 374	100	LTR (ERV1)	LINC00243	Intron	2
chr6:31 013 127	315	SINE (Alu)	MUC22	Intron	2
chr6:31 409 512	84	LINE (L1)	MICA	Intron	2
chr6:32 528 617	311	SINE (Alu)	HLA-DRB5	Intron	1
chr6:34 398 183	177	Retroposon (SVA)	NUDT3	Intron	2
chr6:36 363 389	101	LTR (ERV1)	ETV7	Intron	2
chr6:38 964 348	345	Retroposon (SVA)	DNAH8	Intron	2
chr6:42 702 567	315	SINE (Alu)	PRPH2	Intron	2
chr6:43 927 736	317	SINE (Alu)	LINC01512	Intron	2
chr6:44 319 523	608	LINE (L2)	SPATS1	Intron	2
chr6:47 505 626	805	Retroposon (SVA)	CD2AP	Intron	2
chr6:49 487 167	101	LINE (L1)	CENPQ	Intron	2
chr6:51 982 181	991	Retroposon (SVA)	PKHD1	Intron	2
chr6:54 849 738	324	SINE (Alu)	FAM83B	Intron	2
chr6:64 312 982	307	LINE (L1)	EYS	Intron	1
chr6:65 454 072	309	SINE (Alu)	EYS	Intron	2
chr6:68 932 875	326	SINE (Alu)	ADGRB3	Intron	2
chr6:69 061 778	55	LINE (L1)	ADGRB3	Intron	2
chr6:69 122 017	76	Retroposon (SVA)	ADGRB3	Intron	2
chr6:73 601 480	273	Retroposon (SVA)	SLC17A5	Intron	2
chr6:73 632 007	338	SINE (Alu)	SLC17A5	Intron	2
chr6:73 795 113	327	SINE (Alu)	CD109	Intron	2
chr6:74 628 503	326	SINE (Alu)	LOC101928516	Intron	2
chr6:77 654 536	303	SINE (Alu)	MEI4	Intron	2
chr6:81 587 704	322	SINE (Alu)	LOC105377871	Intron	2
chr6:88 947 722	129	Retroposon (SVA)	RNGTT	Intron	1
chr6:96 061 288	321	SINE (Alu)	FUT9	Intron	2
chr6:96 193 217	1 014	LINE (L1)	FUT9	Intron	2
chr6:96 497 728	68	LINE (L1)	UFL1-AS1	Intron	2
chr6:97 803 451	305	SINE (Alu)	LOC101927314	Intron	2
chr6:101 835 881	1 270	LINE (L1)	GRIK2	Intron	2
chr6:107 078 566	136	SINE (Alu)	BEND3	Intron	2
chr6:109 047 040	677	Retroposon (SVA)	SESN1	Intron	2
chr6:109 047 060	315	Retroposon (SVA)	SESN1	Intron	1
chr6:109 047 311	273	Retroposon (SVA)	SESN1	Intron	1
chr6:110 473 738	308	SINE (Alu)	SLC22A16	Intron	2
chr6:114 227 232	317	SINE (Alu)	HDAC2-AS2	Intron	2
chr6:114 921 893	74	LINE (L1)	LOC107986639	Intron	2
chr6:115 985 916	290	SINE (Alu)	FRK	Intron	2
chr6:117 434 720	320	SINE (Alu)	GOPC	Intron	2
chr6:117 477 503	110	LTR (ERV1)	DCBLD1	Intron	2
chr6:122 658 846	321	SINE (Alu)	PKIB	Intron	2
chr6:126 102 518	314	SINE (Alu)	TRMT11	Intron	2
chr6:130 293 637	291	SINE (Alu)	SAMD3	Intron	2
chr6:130 854 322	316	SINE (Alu)	EPB41L2	Intron	2
chr6:133 410 619	179	SINE (Alu)	EYA4	Intron	2
chr6:136 151 778	71	SINE (Alu)	PDE7B	Intron	2
chr6:142 128 962	6 032	LINE (L1)	NMBR	Intron	2
chr6:143 630 226	312	SINE (Alu)	PHACTR2	Intron	2
chr6:147 874 651	2 645	LINE (L1)	SAMD5	Intron	2
chr6:148 481 014	283	SINE (Alu)	SASH1	Intron	2
chr6:155 117 106	328	SINE (Alu)	TIAM2	Intron	2
chr6:155 996 968	305	SINE (Alu)	LOC101928923	Intron	2
chr6:157 076 539	328	SINE (Alu)	ARID1B	Intron	2
chr6:158 239 907	403	Retroposon (SVA)	TULP4	Intron	1
chr6:158 349 074	263	Retroposon (SVA)	TULP4	Intron	2
chr6:158 745 252	318	SINE (Alu)	SYTL3	Intron	2
chr6:158 783 393	325	SINE (Alu)	EZR	Intron	2
chr6:160 915 407	315	SINE (Alu)	LOC105378093	Intron	2
chr6:161 760 223	4 012	LINE (L1)	PRKN	Intron	2
chr6:163 046 353	327	SINE (Alu)	PACRG	Intron	2
chr6:165 866 403	332	SINE (Alu)	PDE10A	Intron	2
chr6:166 711 308	318	SINE (Alu)	RPS6KA2	Intron	2
chr6:168 588 126	325	SINE (Alu)	SMOC2	Intron	2
chr6:170 185 527	331	SINE (Alu)	LOC154449	Intron	2
chr7:2 268 713	128	Retroposon (SVA)	SNX8	Intron	1
chr7:8 495 321	327	SINE (Alu)	NXPH1	Intron	2
chr7:10 465 264	353	Retroposon (SVA)	MGC4859	Intron	2
chr7:10 465 325	226	Retroposon (SVA)	MGC4859	Intron	2
chr7:15 423 543	134	LTR (ERVL)	AGMO	Intron	2
chr7:18 233 451	328	SINE (Alu)	HDAC9	Intron	2
chr7:18 282 964	280	SINE (Alu)	HDAC9	Intron	2
chr7:19 478 703	4 750	LINE (L1)	LOC105375180	Intron	2
chr7:20 668 937	1 029	Retroposon (SVA)	ABCB5	Intron	2
chr7:22 813 858	315	SINE (Alu)	TOMM7	Intron	2
chr7:26 168 425	119	LINE (L1)	NFE2L3	Intron	2
chr7:29 145 538	327	SINE (Alu)	CHN2	Intron	2
chr7:31 761 097	81	SINE (MIR)	PDE1C	Intron	2
chr7:36 212 541	319	SINE (Alu)	EEPD1	Intron	2
chr7:37 292 777	120	Retroposon (SVA)	ELMO1	Intron	2
chr7:37 797 033	310	SINE (Alu)	GPR141	Intron	2
chr7:64 809 491	125	Retroposon (SVA)	ZNF138	Intron	2
chr7:67 126 181	6 044	LINE (L1)	TYW1	Intron	2
chr7:67 145 044	319	SINE (Alu)	TYW1	Intron	2
chr7:69 293 439	331	SINE (Alu)	LOC105375345	Intron	2
chr7:78 107 874	322	SINE (Alu)	MAGI2	Intron	2
chr7:78 517 185	328	SINE (Alu)	MAGI2	Intron	2
chr7:79 976 821	69	LTR (ERV1)	GNAI1	Intron	2
chr7:80 793 843	332	SINE (Alu)	SEMA3C	Intron	2
chr7:82 801 191	316	SINE (Alu)	PCLO	Intron	2
chr7:83 460 625	63	LTR (ERV1)	SEMA3E	Intron	2
chr7:84 299 804	69	SINE (Alu)	SEMA3A	Intron	2
chr7:85 113 607	306	SINE (Alu)	SEMA3D	Intron	2
chr7:88 751 024	314	SINE (Alu)	LOC107986816	Intron	2
chr7:92 122 219	316	SINE (Alu)	CYP51A1	Intron	2
chr7:95 149 737	326	SINE (Alu)	PPP1R9A	Intron	2
chr7:95 248 185	281	SINE (Alu)	PPP1R9A	Intron	2
chr7:100 948 850	52	SINE (Alu)	MUC3A	Promoter	1
chr7:100 948 850	52	SINE (Alu)	MUC3A	Promoter	1
chr7:100 973 081	331	SINE (Alu)	MUC12	Intron	2
chr7:102 549 902	83	SINE (Alu)	POLR2J3-UPK3BL2	Intron	1
chr7:105 255 127	324	SINE (Alu)	SRPK2	Intron	2
chr7:105 924 008	312	SINE (Alu)	CDHR3	Intron	2
chr7:108 188 803	6 062	LINE (L1)	NRCAM	Intron	2
chr7:110 844 692	97	LINE (L1)	IMMP2L	Intron	2
chr7:118 443 246	317	SINE (Alu)	ANKRD7	Intron	2
chr7:119 619 753	312	SINE (Alu)	LINC02476	Intron	2
chr7:122 469 788	326	SINE (Alu)	CADPS2	Intron	2
chr7:122 733 485	329	SINE (Alu)	CADPS2	Intron	2
chr7:123 455 107	6 076	LINE (L1)	IQUB	Intron	2
chr7:124 141 305	281	SINE (Alu)	LOC102724577	Intron	2
chr7:124 952 959	320	SINE (Alu)	POT1-AS1	Intron	2
chr7:125 022 558	167	LTR (ERVL)	POT1-AS1	Intron	2
chr7:127 761 411	320	SINE (Alu)	SND1	Intron	2
chr7:128 569 092	242	SINE (Alu)	LINC01000	Intron	2
chr7:129 476 156	91	Retroposon (SVA)	STRIP2	Intron	2
chr7:129 642 755	319	SINE (Alu)	NRF1	Intron	2
chr7:130 591 386	627	Retroposon (SVA)	COPG2	Intron	2
chr7:133 896 830	176	SINE (Alu)	EXOC4	Intron	2
chr7:138 789 840	173	SINE (Alu)	ATP6V0A4	Intron	2
chr7:139 101 477	364	Retroposon (SVA)	ZC3HAV1	Intron	2
chr7:140 362 567	222	Retroposon (SVA)	SLC37A3	Intron	2
chr7:142 048 504	86	SINE (Alu)	MGAM	Intron	2
chr7:142 823 654	95	LINE (L1)	LOC105375541	Intron	2
chr7:146 390 925	68	SINE (Alu)	CNTNAP2	Intron	2
chr7:149 554 812	49	Retroposon (SVA)	ZNF767P	Intron	2
chr7:150 342 492	54	SINE (MIR)	RARRES2	Promoter	2
chr7:157 558 082	339	SINE (Alu)	PTPRN2	Intron	2
chr7:157 656 079	316	SINE (Alu)	PTPRN2	Intron	2
chr7:902 456	174	SINE (Alu)	ADAP1	Intron	2
chr8:3 769 437	329	SINE (Alu)	CSMD1	Intron	2
chr8:6 187 437	317	SINE (Alu)	LOC105377797	Intron	2
chr8:6 196 793	91	LINE (L1)	LOC105377797	Intron	2
chr8:9 062 603	322	SINE (Alu)	ERI1	Intron	2
chr8:9 606 142	311	SINE (Alu)	TNKS	Intron	2
chr8:12 641 514	328	SINE (Alu)	LOC729732	Intron	2
chr8:13 099 050	315	SINE (Alu)	DLC1	Intron	2
chr8:15 041 743	156	SINE (Alu)	SGCZ	Intron	2
chr8:15 119 558	222	SINE (Alu)	SGCZ	Intron	2
chr8:16 245 296	275	SINE (Alu)	MSR1	Intron	2
chr8:16 674 061	847	LINE (L1)	LOC101929028	Intron	2
chr8:18 759 951	332	SINE (Alu)	PSD3	Intron	2
chr8:22 625 878	330	SINE (Alu)	BIN3	Intron	2
chr8:22 922 448	348	SINE (Alu)	PEBP4	Intron	2
chr8:25 315 133	309	SINE (Alu)	DOCK5	Intron	2
chr8:28 684 943	129	LINE (L1)	EXTL3	Intron	2
chr8:31 383 933	335	SINE (Alu)	LOC101929492	Intron	2
chr8:32 502 454	313	SINE (Alu)	NRG1	Intron	2
chr8:32 514 935	198	LINE (L1)	NRG1	Intron	2
chr8:33 904 132	284	SINE (Alu)	LOC105379364	Intron	2
chr8:39 006 540	314	SINE (Alu)	ADAM9	Promoter	2
chr8:39 006 540	314	SINE (Alu)	ADAM9	Intron	2
chr8:41 299 576	135	SINE (Alu)	SFRP1	Intron	2
chr8:42 182 377	311	SINE (Alu)	PLAT	Intron	2
chr8:43 179 665	98	Retroposon (SVA)	HGSNAT	Promoter	2
chr8:43 179 665	98	Retroposon (SVA)	HGSNAT	Intron	2
chr8:60 614 219	324	SINE (Alu)	RAB2A	Intron	2
chr8:64 686 420	77	Retroposon (SVA)	CYP7B1	Intron	2
chr8:65 662 664	72	Retroposon (SVA)	MTFR1	Intron	2
chr8:66 469 644	231	LINE (L1)	VXN	Intron	2
chr8:71 002 341	333	SINE (Alu)	LOC105375894	Intron	2
chr8:71 293 805	323	SINE (Alu)	EYA1	Intron	2
chr8:73 371 133	327	SINE (Alu)	LOC105375899	Promoter	2
chr8:74 463 097	318	SINE (Alu)	GDAP1	Intron	2
chr8:79 838 639	319	SINE (Alu)	LOC101927040	Intron	2
chr8:80 855 344	314	SINE (Alu)	ZNF704	Intron	2
chr8:82 289 319	326	SINE (Alu)	LOC105375931	Intron	2
chr8:84 525 028	308	SINE (Alu)	RALYL	Intron	2
chr8:86 067 390	320	SINE (Alu)	PSKH2	Intron	2
chr8:86 302 813	115	LINE (L1)	SLC7A13	Intron	2
chr8:86 694 070	98	Retroposon (SVA)	CNGB3	Promoter	2
chr8:86 694 070	98	Retroposon (SVA)	CNGB3	Intron	2
chr8:86 964 152	73	LTR (ERV1)	CNBD1	Intron	2
chr8:90 375 561	109	LTR (ERVL)	LINC00534	Intron	2
chr8:90 685 715	843	LTR (ERVK)	LOC105375633	Intron	1
chr8:90 686 770	517	LTR (ERV1)	LOC105375633	Intron	2
chr8:94 491 158	168	SINE (Alu)	VIRMA	Promoter	2
chr8:94 491 158	168	SINE (Alu)	VIRMA	Intron	2
chr8:95 455 549	314	SINE (Alu)	CFAP418-AS1	Intron	2
chr8:95 771 303	320	SINE (Alu)	CFAP418-AS1	Intron	2
chr8:109 089 362	322	SINE (Alu)	TRHR	Intron	2
chr8:116 034 779	275	SINE (Alu)	LINC00536	Intron	2
chr8:124 877 714	283	SINE (Alu)	LINC00964	Intron	2
chr8:125 327 685	353	SINE (Alu)	NSMCE2	Intron	2
chr8:126 853 220	290	SINE (Alu)	LOC105375751	Intron	2
chr8:127 025 866	325	SINE (Alu)	LOC105375751	Intron	2
chr8:128 695 771	321	SINE (Alu)	LINC00976	Intron	2
chr8:128 825 941	179	Retroposon (SVA)	LINC00976	Intron	1
chr8:128 826 105	401	Retroposon (SVA)	LINC00976	Intron	2
chr8:129 258 242	278	SINE (Alu)	CCDC26	Intron	2
chr8:138 044 826	318	SINE (Alu)	LOC401478	Intron	2
chr8:138 313 721	313	SINE (Alu)	FAM135B	Intron	2
chr8:140 037 950	328	SINE (Alu)	TRAPPC9	Intron	2
chr8:140 950 042	69	LTR (ERV1)	PTK2	Intron	2
chr9:4 237 128	293	SINE (Alu)	GLIS3	Intron	2
chr9:4 814 224	290	SINE (Alu)	RCL1	Intron	2
chr9:7 035 315	317	SINE (Alu)	KDM4C	Intron	2
chr9:7 852 522	326	SINE (Alu)	DMAC1	Intron	2
chr9:10 461 247	315	SINE (Alu)	PTPRD	Intron	2
chr9:15 234 388	126	Retroposon (SVA)	TTC39B	Intron	2
chr9:18 584 279	6 097	LINE (L1)	ADAMTSL1	Intron	2
chr9:30 495 884	1 261	LINE (L1)	LINC01242	Intron	2
chr9:30 560 926	63	SINE (Alu)	LINC01242	Intron	2
chr9:32 463 887	168	LINE (L1)	RIGI	Intron	2
chr9:32 906 891	65	LTR (ERV1)	APTX	Intron	2
chr9:33 130 552	2 028	Retroposon (SVA)	B4GALT1	Intron	2
chr9:37 594 236	324	SINE (Alu)	SHB	Intron	2
chr9:41 047 836	790	LINE (L1)	FRG1HP	Intron	2
chr9:61 209 379	338	SINE (Alu)	FAM74A4	Intron	2
chr9:67 083 505	299	SINE (Alu)	CNTNAP3P2	Intron	2
chr9:70 917 552	318	SINE (Alu)	TRPM3	Intron	2
chr9:71 308 789	325	SINE (Alu)	TRPM3	Intron	2
chr9:71 929 859	335	SINE (Alu)	C9orf85	Intron	2
chr9:72 616 616	313	SINE (Alu)	TMC1	Intron	2
chr9:72 800 719	334	SINE (Alu)	TMC1	Intron	2
chr9:72 806 388	97	Retroposon (SVA)	TMC1	Intron	2
chr9:72 928 052	347	SINE (Alu)	ALDH1A1	Intron	2
chr9:76 063 864	407	Retroposon (SVA)	PCSK5	Intron	2
chr9:76 836 353	326	SINE (Alu)	PRUNE2	Intron	2
chr9:90 432 247	306	SINE (Alu)	LINC01508	Intron	2
chr9:92 520 051	320	SINE (Alu)	CENPP	Intron	2
chr9:94 625 119	314	SINE (Alu)	FBP1	Intron	2
chr9:96 301 413	321	SINE (Alu)	HSD17B3	Intron	2
chr9:98 328 029	327	SINE (Alu)	GABBR2	Intron	2
chr9:103 314 170	189	SINE (Alu)	LINC01492	Intron	2
chr9:107 460 892	61	SINE (Alu)	LINC01509	Intron	2
chr9:109 499 102	307	SINE (Alu)	PTPN3	Promoter	2
chr9:109 499 102	307	SINE (Alu)	PALM2AKAP2	Intron	2
chr9:112 106 751	326	SINE (Alu)	SUSD1	Intron	2
chr9:112 514 852	225	Retroposon (SVA)	KIAA1958	Intron	2
chr9:112 525 962	261	Retroposon (SVA)	KIAA1958	Intron	2
chr9:115 165 982	292	SINE (Alu)	DELEC1	Intron	2
chr9:116 840 550	351	Retroposon (SVA)	LOC105376239	Intron	2
chr9:118 060 564	357	SINE (Alu)	TLR4	Intron	2
chr9:121 971 181	308	Retroposon (SVA)	TTLL11	Intron	2
chr9:123 802 498	79	LINE (L2)	DENND1A	Intron	2
chr9:125 458 887	431	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 577 664	258	Retroposon (SVA)	MAPKAP1	Intron	2
chr9:125 780 971	115	Retroposon (SVA)	PBX3	Intron	2
chr9:129 689 820	312	SINE (Alu)	PRRX2	Intron	2
chr9:262 447	320	SINE (Alu)	DOCK8	Intron	2
chr9:848 895	334	SINE (Alu)	DMRT1	Intron	2
chr9:862 106	114	Retroposon (SVA)	DMRT1	Intron	2
chr10:14 442 801	327	SINE (Alu)	FRMD4A	Intron	2
chr10:17 670 781	800	Retroposon (SVA)	STAM	Intron	2
chr10:19 261 790	317	SINE (Alu)	MALRD1	Intron	2
chr10:21 057 584	49	SINE (Alu)	NEBL	Intron	2
chr10:25 418 756	6 047	LINE (L1)	GPR158	Intron	2
chr10:25 668 385	323	SINE (Alu)	LINC00836	Intron	2
chr10:26 587 715	268	SINE (Alu)	LINC03028	Intron	2
chr10:26 672 154	194	SINE (Alu)	SELENOOLP	Intron	2
chr10:28 813 597	314	SINE (Alu)	LINC01517	Intron	2
chr10:28 816 354	313	SINE (Alu)	LINC01517	Intron	2
chr10:29 697 180	97	Retroposon (SVA)	SVIL	Intron	2
chr10:29 729 670	173	SINE (Alu)	SVIL	Intron	2
chr10:30 325 832	312	SINE (Alu)	MTPAP	Intron	2
chr10:32 647 469	54	SINE (Alu)	CCDC7	Intron	2
chr10:34 256 748	319	SINE (Alu)	PARD3	Intron	2
chr10:46 461 032	319	SINE (Alu)	LINC00842	Intron	1
chr10:46 876 544	303	SINE (Alu)	FRMPD2B	Promoter	2
chr10:46 876 544	303	SINE (Alu)	FRMPD2B	Intron	2
chr10:49 163 557	337	SINE (Alu)	TMEM273	Intron	2
chr10:50 479 036	345	SINE (Alu)	SGMS1	Intron	2
chr10:52 102 653	275	SINE (Alu)	PRKG1	Intron	2
chr10:52 707 167	323	SINE (Alu)	LNCAROD	Intron	2
chr10:54 167 762	83	LTR (ERV1)	PCDH15	Intron	2
chr10:54 223 519	324	SINE (Alu)	PCDH15	Intron	2
chr10:54 380 550	330	SINE (Alu)	PCDH15	Intron	2
chr10:54 421 459	328	SINE (Alu)	PCDH15	Intron	2
chr10:55 002 597	62	LTR (ERV1)	PCDH15	Intron	2
chr10:59 225 142	326	SINE (Alu)	PHYHIPL	Intron	2
chr10:60 365 085	286	SINE (Alu)	ANK3	Intron	2
chr10:68 235 132	326	SINE (Alu)	LINC02640	Intron	2
chr10:69 850 403	310	SINE (Alu)	COL13A1	Intron	2
chr10:70 407 971	341	Retroposon (SVA)	EIF4EBP2	Intron	1
chr10:70 686 915	78	Retroposon (SVA)	ADAMTS14	Intron	2
chr10:70 845 655	320	SINE (Alu)	SGPL1	Intron	2
chr10:71 433 771	327	SINE (Alu)	CDH23	Intron	2
chr10:73 683 762	337	SINE (Alu)	AGAP5	Promoter	2
chr10:73 683 762	337	SINE (Alu)	AGAP5	Intron	2
chr10:74 470 576	142	LINE (L1)	ADK	Intron	2
chr10:75 333 382	180	Retroposon (SVA)	ZNF503-AS1	Intron	1
chr10:80 543 911	209	LTR (ERV1)	SH2D4B	Intron	1
chr10:84 223 486	314	SINE (Alu)	LRIT2	Intron	2
chr10:86 016 231	311	SINE (Alu)	GRID1	Intron	2
chr10:89 350 315	112	SINE (Alu)	IFIT3	Intron	2
chr10:92 975 822	223	Retroposon (SVA)	EXOC6	Intron	2
chr10:99 838 521	52	Retroposon (SVA)	ABCC2	Intron	1
chr10:101 975 999	320	SINE (Alu)	ARMH3	Intron	2
chr10:102 036 178	141	Retroposon (SVA)	ARMH3	Intron	2
chr10:103 129 540	177	Retroposon (SVA)	NT5C2	Intron	1
chr10:103 583 766	259	SINE (Alu)	NEURL1	Intron	2
chr10:104 057 438	194	SINE (Alu)	COL17A1	Intron	2
chr10:110 251 001	311	SINE (Alu)	MXI1	Intron	2
chr10:112 314 098	315	SINE (Alu)	GUCY2GP	Intron	2
chr10:114 787 733	90	Retroposon (SVA)	LOC101927692	Intron	2
chr10:116 335 447	324	SINE (Alu)	CCDC172	Intron	2
chr10:119 281 154	332	SINE (Alu)	GRK5	Intron	2
chr10:121 911 777	163	SINE (Alu)	ATE1	Intron	2
chr10:127 392 027	314	SINE (Alu)	DOCK1	Intron	2
chr10:130 096 568	97	LINE (L1)	C10orf143	Intron	2
chr10:132 874 286	169	LINE (L1)	CFAP46	Intron	2
chr10:133 217 518	118	SINE (Alu)	KNDC1	Intron	2
chr11:1 576 989	66	SINE (Alu)	KRTAP5-AS1	Intron	2
chr11:2 749 569	124	SINE (Alu)	KCNQ1	Intron	2
chr11:4 138 052	49	Retroposon (SVA)	RRM1	Intron	1
chr11:4 886 716	236	SINE (Alu)	MMP26	Intron	2
chr11:5 863 905	320	SINE (Alu)	TRIM5	Intron	2
chr11:6 349 738	67	SINE (Alu)	LOC101927825	Intron	2
chr11:7 331 214	329	SINE (Alu)	SYT9	Intron	2
chr11:8 424 808	327	SINE (Alu)	STK33	Intron	2
chr11:8 865 752	318	SINE (Alu)	DENND2B	Intron	2
chr11:9 864 386	330	SINE (Alu)	LOC101928008	Intron	2
chr11:10 615 934	315	SINE (Alu)	IRAG1	Intron	2
chr11:11 926 964	2 749	Retroposon (SVA)	USP47	Intron	2
chr11:13 791 469	332	SINE (Alu)	LINC02548	Intron	2
chr11:14 478 463	321	SINE (Alu)	COPB1	Intron	2
chr11:15 998 429	322	SINE (Alu)	SOX6	Intron	2
chr11:19 860 081	223	Retroposon (SVA)	NAV2	Intron	2
chr11:22 241 253	124	LINE (L1)	ANO5	Intron	2
chr11:22 243 729	1 122	LINE (L1)	ANO5	Intron	2
chr11:24 771 395	320	SINE (Alu)	LUZP2	Intron	2
chr11:27 121 782	6 058	LINE (L1)	BBOX1	Intron	2
chr11:27 436 218	388	LINE (L1)	LGR4	Intron	2
chr11:32 412 716	310	SINE (Alu)	WT1	Promoter	2
chr11:32 412 716	310	SINE (Alu)	WT1	Intron	2
chr11:42 034 345	330	SINE (Alu)	LINC02745	Intron	2
chr11:45 738 460	277	Retroposon (SVA)	LOC100507384	Intron	2
chr11:47 785 087	304	SINE (Alu)	NUP160	Intron	2
chr11:49 634 261	302	SINE (Alu)	GRM5P1	Intron	2
chr11:58 139 863	65	LINE (L1)	OR9Q1	Intron	2
chr11:59 645 329	383	Retroposon (SVA)	PATL1	Intron	2
chr11:60 525 909	315	SINE (Alu)	MS4A13	Intron	2
chr11:61 239 572	427	LTR (ERV1)	PGA4	Intron	1
chr11:62 492 876	319	SINE (Alu)	AHNAK	Intron	2
chr11:63 893 356	259	LINE (L1)	MARK2	Intron	2
chr11:65 239 632	130	Retroposon (SVA)	SLC22A20P	Intron	2
chr11:66 216 853	320	SINE (Alu)	PACS1	Intron	2
chr11:67 222 617	535	Retroposon (SVA)	KDM2A	Intron	2
chr11:74 353 859	76	Retroposon (SVA)	PGM2L1	Intron	2
chr11:74 656 965	91	LINE (L1)	POLD3	Intron	2
chr11:76 619 299	608	Retroposon (SVA)	LINC02757	Intron	2
chr11:77 098 076	179	Retroposon (SVA)	CAPN5	Intron	2
chr11:77 098 581	49	Retroposon (SVA)	CAPN5	Intron	1
chr11:77 098 721	225	Retroposon (SVA)	CAPN5	Intron	2
chr11:77 279 527	313	SINE (Alu)	GDPD4	Intron	2
chr11:78 784 911	329	SINE (Alu)	TENM4	Intron	2
chr11:78 879 330	594	Retroposon (SVA)	TENM4	Intron	1
chr11:83 018 315	61	LINE (L1)	RAB30	Intron	2
chr11:86 259 222	317	SINE (Alu)	EED	Intron	2
chr11:87 154 955	166	LINE (L1)	TMEM135	Intron	2
chr11:89 474 978	332	SINE (Alu)	NOX4	Intron	2
chr11:90 267 331	186	LINE (L1)	DISC1FP1	Intron	2
chr11:92 875 310	314	SINE (Alu)	FAT3	Intron	2
chr11:99 858 676	328	SINE (Alu)	CNTN5	Intron	2
chr11:100 748 679	67	LTR (ERV1)	ARHGAP42	Intron	2
chr11:100 910 651	321	SINE (Alu)	ARHGAP42	Intron	2
chr11:102 477 580	220	SINE (Alu)	LOC102723838	Intron	2
chr11:103 330 537	324	SINE (Alu)	DYNC2H1	Intron	2
chr11:104 915 862	323	SINE (Alu)	CASP4LP	Intron	2
chr11:112 331 792	137	SINE (Alu)	LINC02762	Intron	2
chr11:117 251 250	88	Retroposon (SVA)	RNF214	Intron	2
chr11:117 812 780	317	SINE (Alu)	DSCAML1	Intron	2
chr11:118 449 416	320	SINE (Alu)	KMT2A	Intron	2
chr11:119 009 438	322	SINE (Alu)	CENATAC	Promoter	2
chr11:119 009 438	322	SINE (Alu)	CENATAC	Intron	2
chr11:119 253 538	265	Retroposon (SVA)	CBL	Intron	2
chr11:119 507 624	806	Retroposon (SVA)	USP2-AS1	Intron	2
chr11:119 507 776	550	Retroposon (SVA)	USP2-AS1	Intron	2
chr11:122 406 922	307	SINE (Alu)	MIR100HG	Intron	2
chr11:127 071 221	331	SINE (Alu)	LOC101929473	Intron	2
chr11:129 889 646	315	SINE (Alu)	NFRKB	Intron	2
chr11:134 435 747	317	LINE (L1)	B3GAT1-DT	Promoter	2
chr11:134 435 747	317	LINE (L1)	B3GAT1-DT	Intron	2
chr11:428 013	318	SINE (Alu)	ANO9	Intron	2
chr11:696 721	134	SINE (Alu)	EPS8L2	Intron	2
chr11:711 988	299	SINE (Alu)	EPS8L2	Intron	2
chr12:1 980 674	319	SINE (Alu)	CACNA1C	Intron	2
chr12:2 829 906	262	SINE (Alu)	ITFG2	Promoter	2
chr12:2 829 906	262	SINE (Alu)	ITFG2	Intron	2
chr12:7 451 371	285	SINE (Alu)	CD163L1	Intron	2
chr12:8 184 249	400	Retroposon (SVA)	ZNF705A	Intron	2
chr12:9 349 121	79	Retroposon (SVA)	LINC02367	Intron	2
chr12:9 996 539	250	SINE (Alu)	CLEC1B	Intron	2
chr12:10 081 587	318	SINE (Alu)	CLEC1A	Intron	2
chr12:11 026 423	307	SINE (Alu)	PRH1-PRR4	Intron	2
chr12:12 780 744	1 782	LINE (L1)	APOLD1	Intron	2
chr12:14 951 697	321	SINE (Alu)	ARHGDIB	Promoter	2
chr12:14 951 697	321	SINE (Alu)	ARHGDIB	Intron	2
chr12:18 598 680	288	SINE (Alu)	PIK3C2G	Intron	2
chr12:19 653 272	285	SINE (Alu)	AEBP2	Intron	2
chr12:21 662 601	62	LTR (ERV1)	LDHB	Intron	2
chr12:21 933 008	332	SINE (Alu)	ABCC9	Intron	2
chr12:26 785 265	174	Retroposon (SVA)	ITPR2	Intron	1
chr12:26 785 882	126	Retroposon (SVA)	ITPR2	Intron	1
chr12:27 711 861	315	SINE (Alu)	MRPS35	Intron	2
chr12:28 264 364	308	SINE (Alu)	CCDC91	Intron	2
chr12:28 285 662	315	SINE (Alu)	CCDC91	Intron	2
chr12:29 663 691	185	SINE (Alu)	TMTC1	Intron	2
chr12:29 670 964	312	SINE (Alu)	TMTC1	Intron	2
chr12:31 650 024	315	SINE (Alu)	ETFBKMT	Intron	2
chr12:31 923 477	313	SINE (Alu)	LINC02422	Intron	2
chr12:40 279 206	306	SINE (Alu)	LRRK2	Intron	2
chr12:40 438 980	306	SINE (Alu)	MUC19	Intron	2
chr12:41 453 905	240	SINE (Alu)	PDZRN4	Intron	2
chr12:42 228 294	98	Retroposon (SVA)	YAF2	Intron	2
chr12:43 524 175	1 076	LINE (L1)	ADAMTS20	Intron	2
chr12:45 025 760	310	SINE (Alu)	DBX2	Intron	2
chr12:50 776 324	308	SINE (Alu)	ATF1	Intron	2
chr12:56 558 296	304	SINE (Alu)	RBMS2	Intron	2
chr12:62 883 907	329	SINE (Alu)	PPM1H	Intron	2
chr12:64 204 047	85	LINE (L1)	KICS2	Intron	2
chr12:64 783 847	188	SINE (Alu)	TBC1D30	Intron	2
chr12:66 617 791	332	SINE (Alu)	GRIP1	Intron	2
chr12:67 954 736	324	SINE (Alu)	LINC01479	Intron	2
chr12:70 086 207	63	LTR (ERV1)	PRANCR	Intron	1
chr12:78 003 152	329	SINE (Alu)	NAV3	Intron	2
chr12:80 805 951	135	SINE (Alu)	LIN7A	Intron	2
chr12:85 112 496	781	LINE (L1)	LRRIQ1	Intron	2
chr12:86 811 026	109	LINE (L1)	MGAT4C	Intron	2
chr12:91 448 414	292	SINE (Alu)	LOC105369896	Intron	2
chr12:92 452 722	65	SINE (Alu)	LINC02397	Intron	2
chr12:95 355 501	310	SINE (Alu)	LOC105369917	Intron	2
chr12:95 907 477	51	Retroposon (SVA)	CCDC38	Intron	2
chr12:99 387 859	177	SINE (Alu)	ANKS1B	Intron	2
chr12:100 294 427	196	Retroposon (SVA)	SCYL2	Intron	1
chr12:104 923 205	187	SINE (Alu)	SLC41A2	Intron	2
chr12:105 044 596	308	SINE (Alu)	NOPCHAP1	Intron	2
chr12:106 497 167	321	SINE (Alu)	POLR3B	Intron	2
chr12:124 073 312	310	SINE (Alu)	ZNF664	Intron	2
chr12:126 405 316	326	SINE (Alu)	LINC02350	Intron	2
chr12:130 604 739	323	SINE (Alu)	RIMBP2	Intron	2
chr12:131 926 411	79	Retroposon (SVA)	LOC107984455	Intron	2
chr12:132 789 672	57	SINE (Alu)	GOLGA3	Intron	1
chr12:132 868 572	181	SINE (Alu)	CHFR	Intron	2
chr12:676 194	133	SINE (Alu)	LINC02455	Intron	2
chr13:18 196 939	197	SINE (Alu)	FAM230C	Intron	2
chr13:21 320 624	286	SINE (Alu)	MIPEPP3	Intron	2
chr13:21 448 227	144	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:21 448 228	497	Retroposon (SVA)	ZDHHC20	Intron	2
chr13:21 448 382	77	Retroposon (SVA)	ZDHHC20	Intron	1
chr13:25 264 752	135	SINE (Alu)	MTMR6	Intron	2
chr13:28 964 737	320	SINE (Alu)	MTUS2	Intron	2
chr13:28 990 621	66	LTR (ERV1)	MTUS2	Intron	2
chr13:40 955 535	98	Retroposon (SVA)	ELF1	Intron	2
chr13:41 881 722	204	Retroposon (SVA)	VWA8	Intron	2
chr13:41 881 722	126	Retroposon (SVA)	VWA8	Intron	2
chr13:42 152 649	324	SINE (Alu)	DGKH	Intron	2
chr13:42 197 251	413	LINE (L1)	DGKH	Intron	2
chr13:43 416 199	447	Retroposon (SVA)	ENOX1	Intron	2
chr13:45 485 411	795	Retroposon (SVA)	COG3	Intron	2
chr13:46 073 596	308	SINE (Alu)	CPB2-AS1	Intron	2
chr13:46 470 173	298	SINE (Alu)	LINC01198	Promoter	2
chr13:46 470 173	298	SINE (Alu)	LINC01198	Intron	2
chr13:46 557 525	328	SINE (Alu)	LRCH1	Intron	2
chr13:46 584 006	3 087	Retroposon (SVA)	LRCH1	Intron	2
chr13:59 890 901	326	SINE (Alu)	DIAPH3	Intron	2
chr13:60 037 033	130	LINE (L1)	DIAPH3-AS1	Intron	2
chr13:60 647 021	1 430	LINE (L1)	LINC00378	Intron	2
chr13:60 715 401	390	LINE (L1)	LINC00378	Intron	2
chr13:60 758 287	312	SINE (Alu)	LINC00378	Intron	2
chr13:60 793 259	309	SINE (Alu)	LINC00378	Intron	2
chr13:67 329 321	237	SINE (Alu)	LINC00364	Intron	2
chr13:78 010 527	313	SINE (Alu)	OBI1-AS1	Intron	2
chr13:78 077 535	313	SINE (Alu)	OBI1-AS1	Intron	2
chr13:80 799 588	328	SINE (Alu)	LOC105370278	Intron	2
chr13:80 948 934	330	SINE (Alu)	LOC105370278	Intron	2
chr13:84 899 424	231	SINE (Alu)	LOC105370290	Intron	2
chr13:89 749 575	327	SINE (Alu)	LOC107984621	Intron	2
chr13:91 609 018	321	SINE (Alu)	GPC5	Intron	2
chr13:91 861 711	294	SINE (Alu)	GPC5	Intron	2
chr13:92 172 972	319	SINE (Alu)	GPC5	Intron	2
chr13:92 448 880	266	SINE (Alu)	GPC5	Intron	2
chr13:92 538 791	193	LINE (L1)	GPC5	Intron	2
chr13:94 109 467	85	LINE (L1)	GPC6	Intron	2
chr13:98 151 042	326	SINE (Alu)	FARP1	Intron	2
chr13:100 883 706	318	SINE (Alu)	NALCN-AS1	Intron	2
chr13:101 737 015	334	SINE (Alu)	FGF14	Intron	2
chr13:112 678 489	80	Retroposon (SVA)	ATP11AUN	Intron	2
chr13:112 866 638	313	SINE (Alu)	ATP11A	Intron	2
chr13:112 937 994	244	LTR (ERV1)	MCF2L	Intron	2
chr13:113 357 049	132	SINE (Alu)	GRTP1-AS1	Intron	2
chr13:114 116 529	325	SINE (Alu)	RASA3	Intron	2
chr14:20 016 135	352	SINE (Alu)	OR4K14	Intron	2
chr14:20 506 551	125	Retroposon (SVA)	RNASE10	Intron	2
chr14:20 506 760	73	Retroposon (SVA)	RNASE10	Intron	2
chr14:22 637 459	176	Retroposon (SVA)	OR6J1	Intron	2
chr14:22 637 543	533	Retroposon (SVA)	OR6J1	Intron	1
chr14:24 212 532	165	SINE (Alu)	CHMP4A	Promoter	1
chr14:24 212 532	165	SINE (Alu)	TM9SF1	Intron	1
chr14:24 212 676	166	SINE (Alu)	CHMP4A	Promoter	1
chr14:24 212 676	166	SINE (Alu)	TM9SF1	Intron	1
chr14:24 473 726	118	LTR (ERV1)	LOC101927045	Intron	2
chr14:27 832 046	439	LINE (L1)	MIR3171HG	Intron	2
chr14:30 975 089	307	SINE (Alu)	STRN3	Intron	2
chr14:35 009 342	314	SINE (Alu)	SRP54	Intron	2
chr14:37 555 350	126	Retroposon (SVA)	MIPOL1	Intron	2
chr14:37 890 416	335	SINE (Alu)	TTC6	Intron	2
chr14:39 405 877	2 984	LINE (L1)	FBXO33	Intron	2
chr14:39 843 742	321	SINE (Alu)	LOC105370462	Intron	2
chr14:40 110 466	331	SINE (Alu)	LOC105370462	Intron	2
chr14:40 123 223	131	SINE (Alu)	LOC105370462	Intron	2
chr14:51 252 267	312	SINE (Alu)	TMX1	Intron	2
chr14:51 349 610	337	SINE (Alu)	LINC00640	Intron	2
chr14:52 123 272	130	LTR (ERV1)	LINC02319	Intron	2
chr14:52 837 362	56	LTR (ERV1)	LOC105370500	Intron	2
chr14:53 311 386	324	SINE (Alu)	LOC105370502	Intron	2
chr14:55 329 133	320	SINE (Alu)	FBXO34	Intron	2
chr14:57 041 271	330	SINE (Alu)	OTX2-AS1	Intron	2
chr14:59 055 705	1 047	LINE (L1)	LOC107984642	Intron	2
chr14:62 754 961	313	SINE (Alu)	KCNH5	Intron	2
chr14:62 759 564	335	SINE (Alu)	KCNH5	Intron	2
chr14:64 038 275	388	Retroposon (SVA)	SYNE2	Intron	2
chr14:66 467 727	321	SINE (Alu)	CCDC196	Intron	2
chr14:66 703 612	283	LINE (L1)	GPHN	Intron	2
chr14:70 397 965	57	LTR (ERV1)	SYNJ2BP-COX16	Intron	2
chr14:70 813 500	128	SINE (Alu)	MAP3K9-DT	Intron	2
chr14:73 353 583	134	SINE (Alu)	NUMB	Intron	2
chr14:73 535 545	1 418	LTR (ERV1)	HEATR4	Intron	1
chr14:73 535 995	719	LTR (ERV1)	HEATR4	Intron	1
chr14:73 546 923	185	SINE (Alu)	HEATR4	Intron	2
chr14:73 557 101	309	SINE (Alu)	HEATR4	Intron	2
chr14:75 729 453	1 012	LINE (L1)	TTLL5	Intron	2
chr14:76 821 592	170	Retroposon (SVA)	ANGEL1	Intron	1
chr14:76 821 667	172	Retroposon (SVA)	ANGEL1	Intron	1
chr14:77 460 456	318	SINE (Alu)	AHSA1	Intron	2
chr14:78 516 349	331	SINE (Alu)	NRXN3	Intron	2
chr14:80 488 209	1 889	LINE (L1)	CEP128	Intron	2
chr14:81 320 428	2 691	Retroposon (SVA)	STON2	Intron	2
chr14:89 608 202	143	SINE (Alu)	FOXN3	Intron	2
chr14:89 788 459	133	SINE (Alu)	FOXN3	Intron	2
chr14:90 718 834	322	SINE (Alu)	TTC7B	Intron	2
chr14:91 649 660	317	SINE (Alu)	CATSPERB	Intron	2
chr14:91 658 708	312	SINE (Alu)	CATSPERB	Intron	2
chr14:93 364 578	315	SINE (Alu)	UNC79	Intron	2
chr14:100 345 061	96	Retroposon (SVA)	WARS1	Intron	2
chr14:102 676 504	171	Retroposon (SVA)	RCOR1	Intron	2
chr15:22 584 265	135	SINE (Alu)	HERC2P2	Intron	2
chr15:24 892 516	91	SINE (Alu)	PWRN1	Intron	2
chr15:25 758 509	1 459	LTR (ERV1)	ATP10A	Intron	1
chr15:26 627 364	329	SINE (Alu)	GABRB3	Intron	2
chr15:30 674 565	187	SINE (Alu)	LOC100288637	Intron	1
chr15:34 346 663	82	SINE (Alu)	NUTM1	Intron	2
chr15:35 656 775	51	Retroposon (SVA)	DPH6-DT	Intron	2
chr15:35 804 106	309	SINE (Alu)	DPH6-DT	Intron	2
chr15:39 894 051	97	Retroposon (SVA)	GPR176	Intron	2
chr15:40 631 295	709	LINE (L1)	KNL1	Intron	2
chr15:40 808 119	315	SINE (Alu)	ZFYVE19	Promoter	2
chr15:40 808 119	315	SINE (Alu)	ZFYVE19	Intron	2
chr15:43 076 804	126	Retroposon (SVA)	UBR1	Intron	2
chr15:44 531 316	302	SINE (Alu)	EIF3J-DT	Intron	2
chr15:45 277 713	311	SINE (Alu)	SLC28A2-AS1	Intron	2
chr15:45 833 789	325	SINE (Alu)	LOC105370802	Intron	2
chr15:47 215 130	6 055	LINE (L1)	SEMA6D	Intron	2
chr15:47 279 101	87	LINE (L1)	SEMA6D	Intron	2
chr15:51 294 564	66	Retroposon (SVA)	CYP19A1	Intron	2
chr15:54 508 181	314	SINE (Alu)	UNC13C	Intron	2
chr15:55 301 465	306	SINE (Alu)	RAB27A	Intron	2
chr15:55 303 250	176	Retroposon (SVA)	RAB27A	Intron	2
chr15:60 365 043	330	SINE (Alu)	ANXA2	Intron	2
chr15:62 026 065	327	SINE (Alu)	VPS13C	Intron	2
chr15:66 375 798	323	SINE (Alu)	TIPIN	Intron	2
chr15:67 002 508	312	SINE (Alu)	LOC102723493	Promoter	2
chr15:67 002 508	312	SINE (Alu)	LOC102723493	Intron	2
chr15:67 352 555	318	SINE (Alu)	IQCH	Intron	2
chr15:68 395 669	4 447	LINE (L1)	ITGA11	Intron	2
chr15:71 757 533	133	SINE (Alu)	THSD4	Intron	2
chr15:71 768 925	176	Retroposon (SVA)	THSD4	Intron	1
chr15:71 769 394	126	Retroposon (SVA)	THSD4	Intron	2
chr15:72 347 195	318	SINE (Alu)	HEXA	Promoter	2
chr15:72 347 195	318	SINE (Alu)	LOC105370887	Intron	2
chr15:75 481 586	401	Retroposon (SVA)	PTPN9	Intron	2
chr15:75 503 575	196	Retroposon (SVA)	PTPN9	Intron	2
chr15:76 533 663	281	SINE (Alu)	SCAPER	Intron	2
chr15:78 132 275	164	SINE (Alu)	CIB2	Promoter	2
chr15:78 132 275	164	SINE (Alu)	IDH3A	Intron	2
chr15:78 520 843	147	Retroposon (SVA)	HYKK	Intron	2
chr15:78 644 312	318	SINE (Alu)	CHRNB4	Intron	2
chr15:80 355 807	93	SINE (Alu)	ARNT2-DT	Intron	2
chr15:81 100 243	313	SINE (Alu)	CFAP161	Intron	2
chr15:81 743 314	325	SINE (Alu)	LOC102723985	Intron	2
chr15:85 444 567	334	SINE (Alu)	AKAP13	Intron	2
chr15:85 681 718	325	SINE (Alu)	AKAP13	Promoter	2
chr15:85 681 718	325	SINE (Alu)	AKAP13	Intron	2
chr15:89 854 810	78	Retroposon (SVA)	AP3S2	Intron	2
chr15:92 768 257	99	Retroposon (SVA)	FAM174B	Intron	1
chr15:93 023 921	318	SINE (Alu)	CHD2	Intron	2
chr15:93 292 547	315	SINE (Alu)	LOC105370982	Intron	2
chr15:97 656 736	1 101	LINE (L1)	LINC00923	Intron	2
chr15:98 079 273	885	LINE (L1)	LINC02251	Intron	2
chr15:100 270 770	308	SINE (Alu)	ADAMTS17	Intron	2
chr15:100 272 594	328	SINE (Alu)	ADAMTS17	Intron	2
chr16:1 599 474	808	Retroposon (SVA)	LOC105371046	Intron	2
chr16:3 039 306	321	SINE (Alu)	MMP25-AS1	Intron	2
chr16:4 759 340	329	SINE (Alu)	ZNF500	Promoter	2
chr16:4 759 340	329	SINE (Alu)	ZNF500	Intron	2
chr16:5 202 288	126	Retroposon (SVA)	LOC105371067	Intron	2
chr16:5 202 599	50	Retroposon (SVA)	LOC105371067	Intron	1
chr16:5 202 929	301	Retroposon (SVA)	LOC105371067	Intron	2
chr16:5 295 016	320	SINE (Alu)	RBFOX1	Intron	2
chr16:6 743 824	1 436	LINE (L1)	RBFOX1	Intron	2
chr16:6 839 146	326	SINE (Alu)	RBFOX1	Intron	2
chr16:7 176 224	324	SINE (Alu)	RBFOX1	Intron	2
chr16:7 491 379	303	SINE (Alu)	RBFOX1	Intron	2
chr16:10 992 534	314	SINE (Alu)	CLEC16A	Intron	2
chr16:11 335 939	321	Retroposon (SVA)	LOC105371082	Intron	1
chr16:13 437 866	56	SINE (Alu)	SHISA9	Intron	2
chr16:15 399 099	313	SINE (Alu)	MPV17L	Intron	2
chr16:16 168 217	86	SINE (Alu)	ABCC6	Intron	2
chr16:19 506 178	318	SINE (Alu)	GDE1	Intron	2
chr16:23 853 965	324	SINE (Alu)	PRKCB	Intron	2
chr16:24 109 273	326	Retroposon (SVA)	PRKCB	Intron	2
chr16:24 109 273	629	Retroposon (SVA)	PRKCB	Intron	2
chr16:24 316 243	316	SINE (Alu)	CACNG3	Intron	2
chr16:31 105 127	147	Retroposon (SVA)	BCKDK	Promoter	2
chr16:53 841 055	324	SINE (Alu)	FTO	Intron	2
chr16:56 739 403	857	Retroposon (SVA)	NUP93	Intron	1
chr16:59 942 554	319	SINE (Alu)	LINC02141	Intron	2
chr16:60 007 227	320	SINE (Alu)	LINC02141	Intron	2
chr16:65 448 283	314	SINE (Alu)	LINC00922	Intron	2
chr16:69 820 423	53	SINE (Alu)	WWP2	Intron	2
chr16:70 167 766	89	SINE (Alu)	LOC400541	Intron	2
chr16:71 733 509	74	SINE (Alu)	AP1G1	Intron	2
chr16:72 695 339	1 629	LINE (L1)	ZFHX3-AS1	Intron	2
chr16:77 196 294	314	SINE (Alu)	MON1B	Intron	2
chr16:77 806 370	134	SINE (Alu)	VAT1L	Intron	1
chr16:78 658 928	323	SINE (Alu)	WWOX	Intron	2
chr16:80 183 526	321	SINE (Alu)	DYNLRB2-AS1	Intron	2
chr16:80 663 083	326	SINE (Alu)	CDYL2	Intron	2
chr16:80 963 376	312	SINE (Alu)	ARLNC1	Intron	2
chr16:81 244 406	311	SINE (Alu)	BCO1	Intron	2
chr16:82 131 072	299	SINE (Alu)	HSD17B2-AS1	Intron	2
chr16:82 878 496	321	SINE (Alu)	CDH13	Intron	2
chr16:83 632 754	332	SINE (Alu)	CDH13	Intron	2
chr16:84 226 714	334	SINE (Alu)	KCNG4	Intron	2
chr16:85 075 085	330	SINE (Alu)	KIAA0513	Intron	2
chr16:88 462 841	334	SINE (Alu)	ZFPM1	Intron	2
chr16:89 224 966	334	SINE (Alu)	ZNF778	Intron	2
chr16:89 617 671	350	SINE (Alu)	DPEP1	Intron	2
chr17:2 448 181	125	Retroposon (SVA)	METTL16	Intron	2
chr17:3 544 157	132	SINE (Alu)	TRPV3	Intron	2
chr17:4 132 659	134	SINE (Alu)	ZZEF1	Intron	2
chr17:5 516 069	324	SINE (Alu)	NLRP1	Intron	2
chr17:9 269 002	134	SINE (Alu)	STX8	Intron	2
chr17:10 175 248	317	SINE (Alu)	GAS7	Intron	2
chr17:11 972 687	60	LTR (ERV1)	ZNF18	Intron	2
chr17:13 533 513	296	SINE (Alu)	HS3ST3A1	Intron	2
chr17:13 896 324	312	SINE (Alu)	COX10-DT	Intron	2
chr17:16 095 666	104	Retroposon (SVA)	NCOR1	Intron	2
chr17:16 330 605	317	SINE (Alu)	PIGL	Intron	2
chr17:16 630 887	1 318	Retroposon (SVA)	ZNF624	Intron	2
chr17:16 699 504	133	SINE (Alu)	CCDC144A	Intron	2
chr17:16 769 810	318	SINE (Alu)	CCDC144A	Intron	2
chr17:18 430 192	327	SINE (Alu)	KRT17P2	Promoter	2
chr17:18 430 192	327	SINE (Alu)	KRT17P2	Intron	2
chr17:18 888 562	354	Retroposon (SVA)	PRPSAP2	Intron	2
chr17:19 627 935	524	Retroposon (SVA)	SLC47A1P2	Intron	2
chr17:21 292 724	121	SINE (Alu)	MAP2K3	Intron	2
chr17:28 456 137	1 158	Retroposon (SVA)	RSKR	Intron	2
chr17:28 604 078	97	Retroposon (SVA)	SPAG5-AS1	Intron	2
chr17:30 071 289	1 212	LINE (L1)	EFCAB5	Intron	2
chr17:30 736 333	760	Retroposon (SVA)	SUZ12P1	Intron	2
chr17:32 310 717	169	SINE (Alu)	RHBDL3	Intron	2
chr17:32 318 457	185	SINE (Alu)	RHBDL3	Intron	2
chr17:32 566 829	309	SINE (Alu)	MYO1D	Intron	2
chr17:38 594 628	318	SINE (Alu)	SRCIN1	Intron	2
chr17:40 186 588	310	SINE (Alu)	RAPGEFL1	Intron	2
chr17:42 973 221	273	Retroposon (SVA)	PTGES3L-AARSD1	Intron	2
chr17:45 583 232	3 267	Retroposon (SVA)	LRRC37A4P	Intron	2
chr17:47 325 026	261	SINE (Alu)	ITGB3	Intron	2
chr17:48 427 626	323	SINE (Alu)	SKAP1	Intron	2
chr17:51 452 021	304	SINE (Alu)	LINC02072	Intron	2
chr17:56 870 207	293	SINE (Alu)	TRIM25	Intron	2
chr17:61 908 813	311	SINE (Alu)	INTS2	Intron	2
chr17:62 996 973	190	SINE (Alu)	TANC2	Intron	2
chr17:63 488 528	290	SINE (Alu)	ACE	Intron	2
chr17:63 654 314	314	SINE (Alu)	MAP3K3	Intron	2
chr17:72 700 020	318	SINE (Alu)	SLC39A11	Intron	2
chr17:72 701 862	139	SINE (Alu)	SLC39A11	Intron	2
chr17:81 146 946	326	SINE (Alu)	AATK	Intron	2
chr17:82 631 585	304	SINE (Alu)	WDR45B	Intron	2
chr17:362 087	160	LTR (ERV1)	RPH3AL	Intron	2
chr17:572 391	97	Retroposon (SVA)	VPS53	Intron	2
chr17:598 865	418	Retroposon (SVA)	VPS53	Intron	2
chr17:598 886	273	Retroposon (SVA)	VPS53	Intron	1
chr18:1 235 775	321	SINE (Alu)	LOC105371953	Intron	2
chr18:10 911 126	315	SINE (Alu)	PIEZO2	Intron	2
chr18:12 615 769	330	SINE (Alu)	SPIRE1	Intron	2
chr18:21 986 488	321	SINE (Alu)	LINC01900	Intron	2
chr18:23 577 366	155	LTR (ERV1)	NPC1	Promoter	2
chr18:23 577 366	155	LTR (ERV1)	NPC1	Intron	2
chr18:26 958 048	318	SINE (Alu)	AQP4-AS1	Intron	2
chr18:32 609 840	316	SINE (Alu)	LOC112268208	Intron	2
chr18:41 355 349	314	SINE (Alu)	LOC105372083	Intron	2
chr18:48 347 264	57	SINE (Alu)	ZBTB7C	Intron	2
chr18:52 405 374	324	SINE (Alu)	DCC	Intron	2
chr18:53 460 168	322	SINE (Alu)	DCC	Intron	2
chr18:55 478 829	318	SINE (Alu)	MIR4529	Promoter	2
chr18:55 478 829	318	SINE (Alu)	TCF4-AS1	Intron	2
chr18:56 689 827	330	SINE (Alu)	WDR7	Intron	2
chr18:57 632 891	275	Retroposon (SVA)	ATP8B1-AS1	Intron	2
chr18:57 633 005	450	Retroposon (SVA)	ATP8B1-AS1	Intron	2
chr18:57 642 304	305	LTR (ERV1)	ATP8B1-AS1	Intron	1
chr18:57 642 408	101	LTR (ERV1)	ATP8B1-AS1	Intron	1
chr18:57 713 755	143	SINE (Alu)	LOC105372141	Intron	2
chr18:59 482 874	313	SINE (Alu)	CCBE1	Intron	2
chr18:65 820 032	317	SINE (Alu)	CDH7	Intron	2
chr18:68 731 923	315	SINE (Alu)	CCDC102B	Intron	2
chr18:68 905 255	332	SINE (Alu)	CCDC102B	Intron	2
chr18:74 269 351	63	LINE (L2)	CYB5A	Intron	2
chr18:76 241 968	322	SINE (Alu)	LOC105372209	Intron	2
chr18:76 851 081	311	SINE (Alu)	ZNF236	Promoter	2
chr18:76 851 081	311	SINE (Alu)	ZNF236	Intron	2
chr18:77 044 930	317	SINE (Alu)	MBP	Intron	2
chr18:390 833	327	SINE (Alu)	COLEC12	Intron	2
chr19:2 559 735	124	SINE (Alu)	GNG7	Intron	2
chr19:3 287 347	319	SINE (Alu)	CELF5	Intron	2
chr19:5 761 462	154	LTR (ERVL)	CATSPERD	Intron	2
chr19:5 857 371	69	LTR (ERV1)	LOC101928844	Intron	2
chr19:6 355 382	75	Retroposon (SVA)	ACER1	Intron	2
chr19:6 923 838	323	SINE (Alu)	ADGRE1	Intron	2
chr19:7 739 124	316	SINE (Alu)	CLEC4G	Intron	2
chr19:8 896 255	304	SINE (Alu)	MUC16	Promoter	2
chr19:8 896 255	304	SINE (Alu)	MUC16	Intron	2
chr19:10 337 271	310	SINE (Alu)	ICAM3	Intron	2
chr19:12 621 713	307	Retroposon (SVA)	ZNF791	Intron	2
chr19:17 094 112	146	SINE (Alu)	MYO9B	Intron	2
chr19:17 722 278	164	SINE (Alu)	MAP1S	Intron	2
chr19:18 724 788	2 834	Retroposon (SVA)	CRTC1	Intron	2
chr19:20 149 557	148	Retroposon (SVA)	LOC105372310	Intron	2
chr19:20 437 085	77	LTR (ERVL)	LOC105372317	Intron	2
chr19:20 563 164	316	SINE (Alu)	LOC105372316	Intron	2
chr19:21 577 498	319	SINE (Alu)	LOC101929007	Intron	2
chr19:21 577 658	145	SINE (Alu)	LOC101929007	Intron	2
chr19:21 583 747	301	SINE (Alu)	LOC101929007	Intron	1
chr19:23 768 604	321	SINE (Alu)	RPSAP58	Intron	2
chr19:23 828 482	1 553	Retroposon (SVA)	RPSAP58	Intron	2
chr19:23 845 118	2 428	Retroposon (SVA)	RPSAP58	Intron	2
chr19:31 199 763	354	SINE (Alu)	LINC01791	Intron	2
chr19:35 905 651	317	SINE (Alu)	TYROBP	Intron	2
chr19:36 480 621	312	SINE (Alu)	ZNF566	Intron	2
chr19:38 269 830	114	SINE (Alu)	SPINT2	Intron	2
chr19:38 541 449	134	SINE (Alu)	RYR1	Intron	2
chr19:39 905 477	312	SINE (Alu)	FCGBP	Intron	2
chr19:52 720 518	73	Retroposon (SVA)	ZNF611	Intron	2
chr19:55 064 841	306	SINE (Alu)	RDH13	Promoter	2
chr19:55 064 841	306	SINE (Alu)	RDH13	Intron	2
chr19:56 454 674	316	SINE (Alu)	ZNF667	Intron	2
chr20:1 149 836	155	SINE (Alu)	PSMF1	Intron	2
chr20:2 271 514	272	SINE (Alu)	TGM3	Intron	2
chr20:3 261 760	311	SINE (Alu)	DNAAF9	Intron	2
chr20:8 689 955	304	SINE (Alu)	PLCB1	Intron	2
chr20:9 641 462	118	LTR (ERV1)	PAK5	Intron	2
chr20:11 300 930	123	LINE (L1)	LOC339593	Intron	2
chr20:15 107 012	324	SINE (Alu)	MACROD2	Intron	2
chr20:15 125 949	291	SINE (Alu)	MACROD2	Intron	2
chr20:16 498 848	324	LINE (L1)	KIF16B	Intron	2
chr20:18 689 894	175	SINE (Alu)	DTD1	Intron	2
chr20:20 115 291	326	SINE (Alu)	CFAP61	Intron	2
chr20:25 562 187	443	Retroposon (SVA)	NINL	Intron	2
chr20:30 345 338	321	SINE (Alu)	FAM242A	Intron	2
chr20:35 213 917	183	SINE (Alu)	PROCR	Intron	2
chr20:35 361 226	301	SINE (Alu)	UQCC1	Intron	2
chr20:35 564 380	148	SINE (Alu)	FER1L4	Intron	2
chr20:35 870 631	323	SINE (Alu)	PHF20	Intron	2
chr20:44 676 839	2 738	Retroposon (SVA)	LINC01260	Intron	2
chr20:47 525 869	146	Retroposon (SVA)	NCOA3	Intron	2
chr20:47 525 872	344	Retroposon (SVA)	NCOA3	Intron	2
chr20:47 589 925	2 892	Retroposon (SVA)	NCOA3	Intron	2
chr20:48 685 898	193	SINE (Alu)	PREX1	Intron	2
chr20:50 685 661	314	SINE (Alu)	RIPOR3	Intron	2
chr20:60 439 016	75	LINE (L1)	MIR646HG	Intron	2
chr20:60 600 158	76	LTR (ERVL)	MIR646HG	Intron	2
chr20:63 873 047	325	SINE (Alu)	TPD52L2	Intron	2
chr21:10 508 068	56	LINE (L1)	BAGE2	Intron	2
chr21:13 042 671	317	SINE (Alu)	ANKRD30BP2	Promoter	1
chr21:13 042 671	317	SINE (Alu)	ANKRD30BP2	Intron	1
chr21:15 556 506	387	LINE (L1)	LOC101927745	Intron	2
chr21:24 981 909	324	SINE (Alu)	LINC01692	Intron	2
chr21:27 385 451	316	SINE (Alu)	LOC105372762	Intron	2
chr21:32 433 906	139	SINE (Alu)	EVA1C	Intron	2
chr21:32 482 930	67	SINE (Alu)	EVA1C	Intron	2
chr21:35 865 629	323	SINE (Alu)	LOC101928269	Intron	2
chr21:37 632 243	323	SINE (Alu)	KCNJ6	Intron	2
chr21:37 685 537	314	SINE (Alu)	KCNJ6	Intron	2
chr21:42 778 574	194	Retroposon (SVA)	LINC01668	Intron	1
chr21:45 622 445	327	SINE (Alu)	LOC107985485	Intron	2
chr22:11 849 283	125	LTR (ERV1)	LOC107984037	Intron	2
chr22:11 860 399	311	SINE (Alu)	LOC107984037	Intron	2
chr22:17 224 399	323	SINE (Alu)	ADA2	Intron	2
chr22:17 567 653	357	SINE (Alu)	SLC25A18	Intron	2
chr22:18 028 745	324	SINE (Alu)	LINC01634	Promoter	2
chr22:18 106 451	286	LTR (ERVL)	TUBA8	Intron	2
chr22:18 801 807	135	SINE (Alu)	GGT3P	Intron	2
chr22:19 373 922	126	SINE (Alu)	HIRA	Intron	2
chr22:22 644 845	318	SINE (Alu)	POM121L1P	Promoter	2
chr22:22 644 845	318	SINE (Alu)	GGTLC2	Intron	2
chr22:24 000 536	318	SINE (Alu)	GSTT4	Intron	2
chr22:25 071 581	97	SINE (Alu)	KIAA1671	Intron	2
chr22:26 553 545	141	SINE (Alu)	TPST2	Intron	2
chr22:26 773 144	905	Retroposon (SVA)	MIATNB	Intron	2
chr22:26 773 195	122	Retroposon (SVA)	MIATNB	Intron	1
chr22:29 676 947	51	LINE (L1)	NF2	Intron	2
chr22:30 071 804	329	SINE (Alu)	HORMAD2-AS1	Intron	2
chr22:30 597 422	160	LTR (ERV1)	PES1	Intron	2
chr22:32 423 938	292	SINE (Alu)	BPIFC	Intron	2
chr22:32 431 424	328	SINE (Alu)	BPIFC	Intron	2
chr22:32 682 036	150	LINE (L2)	SYN3	Intron	2
chr22:33 132 511	315	SINE (Alu)	LINC01640	Intron	2
chr22:34 034 608	341	SINE (Alu)	LINC01643	Intron	2
chr22:40 501 143	130	Retroposon (SVA)	MRTFA	Intron	2
chr22:40 537 218	98	Retroposon (SVA)	MRTFA	Intron	2
chr22:40 537 639	559	Retroposon (SVA)	MRTFA	Intron	1
chr22:41 314 923	314	SINE (Alu)	ZC3H7B	Intron	2
chr22:41 835 230	135	SINE (Alu)	SREBF2-AS1	Promoter	2
chr22:41 835 230	135	SINE (Alu)	SREBF2	Intron	2
chr22:42 818 815	314	SINE (Alu)	ARFGAP3	Intron	2
chr22:43 173 307	327	SINE (Alu)	TTLL12	Intron	2
chr22:43 928 708	1 147	LINE (L1)	PNPLA3	Intron	2
chrX:1 270 917	182	SINE (Alu)	CSF2RA	Intron	2
chrX:1 304 189	333	SINE (Alu)	CSF2RA	Intron	2
chrX:1 432 708	269	Retroposon (SVA)	ASMTL	Intron	1
chrX:6 197 434	113	SINE (Alu)	NLGN4X	Intron	2
chrX:7 941 188	158	SINE (Alu)	LOC107985675	Intron	2
chrX:10 032 829	270	SINE (Alu)	WWC3	Intron	2
chrX:16 964 930	125	Retroposon (SVA)	REPS2	Intron	2
chrX:19 074 340	54	SINE (Alu)	ADGRG2	Intron	2
chrX:24 709 090	129	Retroposon (SVA)	POLA1	Intron	2
chrX:29 333 929	49	Retroposon (SVA)	IL1RAPL1	Intron	2
chrX:34 249 205	395	LINE (L1)	LOC105373153	Intron	2
chrX:40 080 060	337	SINE (Alu)	BCOR	Intron	2
chrX:45 040 274	164	Retroposon (SVA)	KDM6A	Intron	2
chrX:65 457 297	346	Retroposon (SVA)	ZC3H12B	Intron	2
chrX:68 326 721	624	Retroposon (SVA)	OPHN1	Intron	2
chrX:70 350 008	116	Retroposon (SVA)	KIF4A	Intron	2
chrX:72 681 506	126	Retroposon (SVA)	PHKA1	Intron	2
chrX:80 396 883	836	Retroposon (SVA)	TENT5D	Intron	2
chrX:84 080 389	1 362	LINE (L1)	RPS6KA6	Intron	2
chrX:92 170 920	135	SINE (Alu)	PCDH11X	Intron	2
chrX:96 282 339	318	SINE (Alu)	LOC105373294	Intron	2
chrX:100 972 832	761	Retroposon (SVA)	ARL13A	Intron	2
chrX:105 239 587	148	LTR (ERV1)	IL1RAPL2	Intron	2
chrX:107 501 516	133	SINE (Alu)	FRMPD3	Intron	2
chrX:112 314 520	6 057	LINE (L1)	RTL4	Intron	2
chrX:118 888 886	67	LTR (ERV1)	LINC01285	Intron	2
chrX:124 128 746	222	Retroposon (SVA)	STAG2	Intron	2
chrX:128 450 745	54	LTR (ERVL)	LOC107985698	Intron	2
chrX:131 787 913	310	SINE (Alu)	FIRRE	Intron	2
chrX:147 231 728	107	LINE (L1)	MIR506	Promoter	1
chrX:147 231 728	107	LINE (L1)	LOC105373347	Intron	1
chrX:147 992 453	778	Retroposon (SVA)	FMR1NB	Intron	2
chrX:152 833 245	315	SINE (Alu)	NSDHL	Intron	2

2.2 Class II Elements

2.2.1 Distribution

1. Unique class II TE insertions occurrences on the genome. B) Gene annotations of class II TE insertions on the genome. A single TE may be annotated more than once.

2.2.2 Class II TEs on gene sequences

Click to show table with 7 rows.

Position	Length	Type	Gene	Annotation	Occurrences
chr1:240 512 502	176	DNA (hAT)	GREM2	Intron	2
chr3:197 847 677	57	DNA (TcMar)	LRCH3	Promoter	2
chr3:197 847 677	57	DNA (TcMar)	LRCH3	Intron	2
chr5:177 779 712	93	DNA (TcMar)	FAM153A	Intron	2
chr8:2 174 153	263	DNA (hAT)	LOC105377781	Intron	2
chr10:35 373 887	112	DNA (TcMar)	CCNY	Intron	2
chr11:41 072 280	87	DNA (TcMar)	LRRC4C	Intron	2

3 TE Deletions

It is common to find deletions whose coordinates match those of a TE sequence in the reference genome. This section presents them.

• 1 729 TE deletions have been found, adding up to 3 327 occurrences among cases.
• These deletions have a mean prevalence per sample of 1.9 ± 0.26 (median of 2).
• The deletion length is in the range of 303-332 bp for 50% of them (Q2-Q3, both included), and the maximum length found was 8 504, for a deleted ERVK sequence.

3.1 Allele frequency

• The mean AF for deletions is 0.77 ± 0.27 (median of 1).
• With 867 (867 of which has passed the stringent filtering) deletions appearing in a homozygous state in all patients (Fig. 7). On the other hand, 52 deletions were genotyped as 0/0 on all cases, and have not been included in the rest of this section.

Allele frequency is shown for TE deletions for each chromosome. Each dot marks a different deletion.

4 Enrichment analysis

This section shows the result of enrichment analysis on the genes affected with TE insertions.

4.1 Gene Ontology

4.1.0.1 Annotation group: MF (Molecular Function)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is NADP-retinol dehydrogenase activity (2.347664e-05), and the highest (among the lowest 10) is glucuronosyltransferase activity (0.001573591). The ratio is 67.02796, i.e., they differ in 1 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0052650	NADP-retinol dehydrogenase activity	10/905	24/20758	2.653e-08	2.348e-05	2.103e-05	10	0.01105
GO:0005096	GTPase activator activity	35/905	304/20758	1.717e-07	7.597e-05	6.804e-05	35	0.03867
GO:0005085	guanyl-nucleotide exchange factor activity	30/905	245/20758	3.453e-07	0.0001018	9.122e-05	30	0.03315
GO:0004033	aldo-keto reductase (NADP) activity	11/905	41/20758	9.667e-07	0.0002109	0.0001889	11	0.01215
GO:0008106	alcohol dehydrogenase (NADP+) activity	10/905	34/20758	1.192e-06	0.0002109	0.0001889	10	0.01105
GO:0005516	calmodulin binding	26/905	210/20758	1.672e-06	0.0002466	0.0002208	26	0.02873
GO:0042578	phosphoric ester hydrolase activity	37/905	396/20758	1.179e-05	0.001491	0.001335	37	0.04088
GO:0046979	TAP2 binding	7/905	20/20758	1.377e-05	0.001523	0.001364	7	0.007735
GO:0022836	gated channel activity	35/905	372/20758	1.74e-05	0.001574	0.001409	35	0.03867
GO:0015020	glucuronosyltransferase activity	9/905	36/20758	1.778e-05	0.001574	0.001409	9	0.009945
GO:0003779	actin binding	41/905	471/20758	2.2e-05	0.001666	0.001492	41	0.0453
GO:0071889	14-3-3 protein binding	9/905	37/20758	2.259e-05	0.001666	0.001492	9	0.009945
GO:0035091	phosphatidylinositol binding	29/905	288/20758	2.609e-05	0.001776	0.001591	29	0.03204
GO:0005543	phospholipid binding	42/905	495/20758	3.198e-05	0.002006	0.001797	42	0.04641
GO:0005216	ion channel activity	41/905	480/20758	3.401e-05	0.002006	0.001797	41	0.0453
GO:0016757	glycosyltransferase activity	28/905	289/20758	7.07e-05	0.00391	0.003502	28	0.03094
GO:0030881	beta-2-microglobulin binding	7/905	26/20758	9.288e-05	0.004759	0.004262	7	0.007735
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	18/905	150/20758	9.679e-05	0.004759	0.004262	18	0.01989
GO:0016758	hexosyltransferase activity	22/905	210/20758	0.0001341	0.006245	0.005594	22	0.02431
GO:0008194	UDP-glycosyltransferase activity	18/905	157/20758	0.0001738	0.007689	0.006887	18	0.01989
GO:0046978	TAP1 binding	7/905	29/20758	0.0001966	0.008284	0.007419	7	0.007735
GO:0070679	inositol 1,4,5 trisphosphate binding	5/905	14/20758	0.0002243	0.009025	0.008083	5	0.005525
GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	18/905	162/20758	0.0002575	0.009909	0.008875	18	0.01989
GO:0031267	small GTPase binding	27/905	297/20758	0.0002691	0.009922	0.008887	27	0.02983
GO:0004721	phosphoprotein phosphatase activity	20/905	194/20758	0.0003286	0.01163	0.01042	20	0.0221
GO:0005262	calcium channel activity	15/905	126/20758	0.0003922	0.01335	0.01196	15	0.01657
GO:0022843	voltage-gated cation channel activity	17/905	156/20758	0.0004742	0.01501	0.01345	17	0.01878
GO:0015085	calcium ion transmembrane transporter activity	16/905	142/20758	0.000475	0.01501	0.01345	16	0.01768
GO:0005261	cation channel activity	30/905	360/20758	0.0005576	0.01702	0.01524	30	0.03315
GO:0051020	GTPase binding	28/905	329/20758	0.0006054	0.01786	0.01599	28	0.03094
GO:0008266	poly(U) RNA binding	6/905	26/20758	0.0007344	0.02096	0.01878	6	0.00663
GO:0015278	calcium-release channel activity	5/905	18/20758	0.0008301	0.02236	0.02003	5	0.005525
GO:0005080	protein kinase C binding	9/905	58/20758	0.0008526	0.02236	0.02003	9	0.009945
GO:0008081	phosphoric diester hydrolase activity	12/905	95/20758	0.0008592	0.02236	0.02003	12	0.01326
GO:0015276	ligand-gated ion channel activity	16/905	152/20758	0.001001	0.02442	0.02187	16	0.01768
GO:0022834	ligand-gated channel activity	16/905	152/20758	0.001001	0.02442	0.02187	16	0.01768
GO:0045296	cadherin binding	29/905	357/20758	0.001021	0.02442	0.02187	29	0.03204
GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	5/905	19/20758	0.001086	0.0253	0.02266	5	0.005525
GO:0004725	protein tyrosine phosphatase activity	13/905	112/20758	0.001188	0.02695	0.02414	13	0.01436
GO:0043225	ATPase-coupled inorganic anion transmembrane transporter activity	4/905	12/20758	0.001341	0.02856	0.02558	4	0.00442
GO:0008187	poly-pyrimidine tract binding	6/905	29/20758	0.001355	0.02856	0.02558	6	0.00663
GO:0045499	chemorepellent activity	6/905	29/20758	0.001355	0.02856	0.02558	6	0.00663
GO:0050811	GABA receptor binding	5/905	20/20758	0.001397	0.02875	0.02575	5	0.005525
GO:0032451	demethylase activity	7/905	40/20758	0.001547	0.03052	0.02734	7	0.007735
GO:0016791	phosphatase activity	25/905	300/20758	0.001552	0.03052	0.02734	25	0.02762
GO:0070717	poly-purine tract binding	6/905	30/20758	0.001632	0.03141	0.02813	6	0.00663
GO:0044325	transmembrane transporter binding	14/905	131/20758	0.001749	0.03178	0.02847	14	0.01547
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	5/905	21/20758	0.001768	0.03178	0.02847	5	0.005525
GO:0019198	transmembrane receptor protein phosphatase activity	5/905	21/20758	0.001768	0.03178	0.02847	5	0.005525
GO:1901981	phosphatidylinositol phosphate binding	18/905	191/20758	0.001796	0.03178	0.02847	18	0.01989
GO:1902936	phosphatidylinositol bisphosphate binding	13/905	118/20758	0.001916	0.0332	0.02973	13	0.01436
GO:0005217	intracellular ligand-gated ion channel activity	6/905	31/20758	0.001951	0.0332	0.02973	6	0.00663
GO:0046873	metal ion transmembrane transporter activity	34/905	466/20758	0.002459	0.04106	0.03677	34	0.03757
GO:0030215	semaphorin receptor binding	5/905	24/20758	0.003315	0.05361	0.04801	5	0.005525
GO:0034236	protein kinase A catalytic subunit binding	4/905	15/20758	0.003332	0.05361	0.04801	4	0.00442
GO:0005245	voltage-gated calcium channel activity	7/905	46/20758	0.003543	0.056	0.05015	7	0.007735
GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	5/905	26/20758	0.004773	0.07411	0.06638	5	0.005525
GO:0030165	PDZ domain binding	10/905	89/20758	0.005334	0.07945	0.07116	10	0.01105
GO:0030507	spectrin binding	5/905	27/20758	0.005651	0.07945	0.07116	5	0.005525
GO:0046703	natural killer cell lectin-like receptor binding	5/905	27/20758	0.005651	0.07945	0.07116	5	0.005525
GO:0099604	ligand-gated calcium channel activity	5/905	27/20758	0.005651	0.07945	0.07116	5	0.005525
GO:0046977	TAP binding	7/905	50/20758	0.005691	0.07945	0.07116	7	0.007735
GO:0005244	voltage-gated ion channel activity	18/905	213/20758	0.005745	0.07945	0.07116	18	0.01989
GO:0022832	voltage-gated channel activity	18/905	213/20758	0.005745	0.07945	0.07116	18	0.01989
GO:0098631	cell adhesion mediator activity	8/905	64/20758	0.006454	0.08759	0.07845	8	0.00884
GO:0004112	cyclic-nucleotide phosphodiesterase activity	5/905	28/20758	0.006637	0.08759	0.07845	5	0.005525
GO:0003756	protein disulfide isomerase activity	4/905	18/20758	0.00673	0.08759	0.07845	4	0.00442
GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	4/905	18/20758	0.00673	0.08759	0.07845	4	0.00442
GO:0043178	alcohol binding	10/905	93/20758	0.007259	0.09224	0.08261	10	0.01105
GO:0005547	phosphatidylinositol-3,4,5-trisphosphate binding	6/905	40/20758	0.007296	0.09224	0.08261	6	0.00663
GO:0004435	phosphatidylinositol phospholipase C activity	5/905	29/20758	0.007738	0.0929	0.0832	5	0.005525
GO:0015431	ABC-type glutathione S-conjugate transporter activity	3/905	10/20758	0.007873	0.0929	0.0832	3	0.003315
GO:0051864	histone H3-methyl-lysine-36 demethylase activity	3/905	10/20758	0.007873	0.0929	0.0832	3	0.003315
GO:0070739	protein-glutamic acid ligase activity	3/905	10/20758	0.007873	0.0929	0.0832	3	0.003315
GO:0070740	tubulin-glutamic acid ligase activity	3/905	10/20758	0.007873	0.0929	0.0832	3	0.003315
GO:0008569	minus-end-directed microtubule motor activity	4/905	19/20758	0.008235	0.0959	0.08589	4	0.00442
GO:0098632	cell-cell adhesion mediator activity	7/905	54/20758	0.008688	0.0998	0.08939	7	0.007735
GO:0032452	histone demethylase activity	5/905	30/20758	0.008959	0.0998	0.08939	5	0.005525
GO:0140457	protein demethylase activity	5/905	30/20758	0.008959	0.0998	0.08939	5	0.005525
GO:0005267	potassium channel activity	12/905	126/20758	0.009022	0.0998	0.08939	12	0.01326
GO:0051018	protein kinase A binding	7/905	55/20758	0.00959	0.1048	0.09385	7	0.007735
GO:0046790	virion binding	3/905	11/20758	0.01048	0.1131	0.1013	3	0.003315
GO:0004629	phospholipase C activity	5/905	32/20758	0.01179	0.1242	0.1112	5	0.005525
GO:0070566	adenylyltransferase activity	5/905	32/20758	0.01179	0.1242	0.1112	5	0.005525
GO:0005154	epidermal growth factor receptor binding	5/905	33/20758	0.01341	0.136	0.1218	5	0.005525
GO:0005249	voltage-gated potassium channel activity	10/905	102/20758	0.01352	0.136	0.1218	10	0.01105
GO:0001851	complement component C3b binding	3/905	12/20758	0.01352	0.136	0.1218	3	0.003315
GO:0008331	high voltage-gated calcium channel activity	3/905	12/20758	0.01352	0.136	0.1218	3	0.003315
GO:0031681	G-protein beta-subunit binding	4/905	22/20758	0.01402	0.1368	0.1225	4	0.00442
GO:0015079	potassium ion transmembrane transporter activity	14/905	166/20758	0.01403	0.1368	0.1225	14	0.01547
GO:0003774	cytoskeletal motor activity	11/905	118/20758	0.01407	0.1368	0.1225	11	0.01215
GO:0016247	channel regulator activity	13/905	150/20758	0.01425	0.137	0.1227	13	0.01436
GO:0016706	2-oxoglutarate-dependent dioxygenase activity	7/905	60/20758	0.01515	0.1442	0.1291	7	0.007735
GO:0008375	acetylglucosaminyltransferase activity	6/905	47/20758	0.0158	0.1487	0.1332	6	0.00663
GO:0008093	cytoskeletal anchor activity	4/905	23/20758	0.01639	0.1527	0.1368	4	0.00442
GO:0099094	ligand-gated cation channel activity	11/905	122/20758	0.01767	0.1629	0.1459	11	0.01215
GO:1904315	transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential	7/905	62/20758	0.01792	0.1635	0.1464	7	0.007735
GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	9/905	92/20758	0.01884	0.1682	0.1507	9	0.009945
GO:0051117	ATPase binding	9/905	92/20758	0.01884	0.1682	0.1507	9	0.009945
GO:0008143	poly(A) binding	4/905	24/20758	0.01901	0.1682	0.1507	4	0.00442

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.2 Annotation group: BP (Biological Process)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is negative regulation of natural killer cell activation (4.1123e-10), and the highest (among the lowest 10) is regulation of neuron projection development (6.569717e-05). The ratio is 159757.71, i.e., they differ in 5 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0032815	negative regulation of natural killer cell activation	13/898	20/21069	8.268e-14	4.112e-10	3.834e-10	13	0.01448
GO:0009644	response to high light intensity	10/898	12/21069	1.151e-12	2.862e-09	2.669e-09	10	0.01114
GO:0043321	regulation of natural killer cell degranulation	8/898	10/21069	4.406e-10	5.479e-07	5.108e-07	8	0.008909
GO:0043323	positive regulation of natural killer cell degranulation	8/898	10/21069	4.406e-10	5.479e-07	5.108e-07	8	0.008909
GO:0009642	response to light intensity	11/898	26/21069	3.406e-09	3.389e-06	3.16e-06	11	0.01225
GO:0043320	natural killer cell degranulation	9/898	17/21069	7.968e-09	6.606e-06	6.159e-06	9	0.01002
GO:0032814	regulation of natural killer cell activation	15/898	59/21069	1.707e-08	1.213e-05	1.131e-05	15	0.0167
GO:0042574	retinal metabolic process	11/898	30/21069	2.059e-08	1.28e-05	1.194e-05	11	0.01225
GO:0051056	regulation of small GTPase mediated signal transduction	39/898	343/21069	2.643e-08	1.461e-05	1.362e-05	39	0.04343
GO:0010975	regulation of neuron projection development	46/898	468/21069	1.321e-07	6.57e-05	6.126e-05	46	0.05122
GO:0006063	uronic acid metabolic process	10/898	29/21069	1.801e-07	7.464e-05	6.96e-05	10	0.01114
GO:0019585	glucuronate metabolic process	10/898	29/21069	1.801e-07	7.464e-05	6.96e-05	10	0.01114
GO:0010842	retina layer formation	11/898	37/21069	2.45e-07	9.373e-05	8.74e-05	11	0.01225
GO:0052695	cellular glucuronidation	9/898	24/21069	3.272e-07	0.0001162	0.0001084	9	0.01002
GO:0045920	negative regulation of exocytosis	11/898	44/21069	1.672e-06	0.0005543	0.0005169	11	0.01225
GO:0016358	dendrite development	29/898	262/21069	2.74e-06	0.0008519	0.0007943	29	0.03229
GO:0034329	cell junction assembly	42/898	468/21069	4.858e-06	0.001421	0.001325	42	0.04677
GO:0042461	photoreceptor cell development	12/898	60/21069	7.068e-06	0.001953	0.001821	12	0.01336
GO:0042445	hormone metabolic process	29/898	277/21069	8.207e-06	0.002148	0.002003	29	0.03229
GO:0001523	retinoid metabolic process	16/898	105/21069	9.273e-06	0.002306	0.00215	16	0.01782
GO:0043301	negative regulation of leukocyte degranulation	7/898	20/21069	1.188e-05	0.002814	0.002624	7	0.007795
GO:0016101	diterpenoid metabolic process	16/898	108/21069	1.338e-05	0.003025	0.002821	16	0.01782
GO:0042462	eye photoreceptor cell development	10/898	45/21069	1.543e-05	0.003336	0.003111	10	0.01114
GO:0002725	negative regulation of T cell cytokine production	7/898	21/21069	1.717e-05	0.003558	0.003318	7	0.007795
GO:0032816	positive regulation of natural killer cell activation	9/898	37/21069	1.889e-05	0.003759	0.003505	9	0.01002
GO:0048813	dendrite morphogenesis	19/898	150/21069	2.168e-05	0.004149	0.003868	19	0.02116
GO:0007265	Ras protein signal transduction	35/898	392/21069	3.278e-05	0.005754	0.005365	35	0.03898
GO:0043302	positive regulation of leukocyte degranulation	8/898	31/21069	3.472e-05	0.005754	0.005365	8	0.008909
GO:1903306	negative regulation of regulated secretory pathway	8/898	31/21069	3.472e-05	0.005754	0.005365	8	0.008909
GO:0006081	cellular aldehyde metabolic process	13/898	81/21069	3.592e-05	0.005754	0.005365	13	0.01448
GO:0042572	retinol metabolic process	12/898	70/21069	3.634e-05	0.005754	0.005365	12	0.01336
GO:0002323	natural killer cell activation involved in immune response	9/898	40/21069	3.702e-05	0.005754	0.005365	9	0.01002
GO:1903531	negative regulation of secretion by cell	20/898	171/21069	4.281e-05	0.006453	0.006017	20	0.02227
GO:0002477	antigen processing and presentation of exogenous peptide antigen via MHC class Ib	7/898	24/21069	4.568e-05	0.006615	0.006168	7	0.007795
GO:0034754	cellular hormone metabolic process	20/898	172/21069	4.655e-05	0.006615	0.006168	20	0.02227
GO:0006721	terpenoid metabolic process	16/898	121/21069	5.613e-05	0.007756	0.007232	16	0.01782
GO:0051048	negative regulation of secretion	22/898	203/21069	5.856e-05	0.007872	0.00734	22	0.0245
GO:0046578	regulation of Ras protein signal transduction	23/898	218/21069	6.101e-05	0.007985	0.007446	23	0.02561
GO:0046530	photoreceptor cell differentiation	12/898	74/21069	6.412e-05	0.008178	0.007625	12	0.01336
GO:0099173	postsynapse organization	20/898	183/21069	0.0001113	0.01365	0.01272	20	0.02227
GO:0007605	sensory perception of sound	19/898	169/21069	0.0001125	0.01365	0.01272	19	0.02116
GO:0035795	negative regulation of mitochondrial membrane permeability	7/898	28/21069	0.0001346	0.01594	0.01487	7	0.007795
GO:0017157	regulation of exocytosis	23/898	230/21069	0.0001379	0.01595	0.01487	23	0.02561
GO:0001754	eye photoreceptor cell differentiation	10/898	58/21069	0.0001529	0.01608	0.01499	10	0.01114
GO:1903307	positive regulation of regulated secretory pathway	10/898	58/21069	0.0001529	0.01608	0.01499	10	0.01114
GO:0007269	neurotransmitter secretion	18/898	159/21069	0.0001545	0.01608	0.01499	18	0.02004
GO:0099643	signal release from synapse	18/898	159/21069	0.0001545	0.01608	0.01499	18	0.02004
GO:0045921	positive regulation of exocytosis	13/898	93/21069	0.0001552	0.01608	0.01499	13	0.01448
GO:0097120	receptor localization to synapse	10/898	59/21069	0.0001771	0.01764	0.01645	10	0.01114
GO:0086014	atrial cardiac muscle cell action potential	6/898	21/21069	0.0001844	0.01764	0.01645	6	0.006682
GO:0086026	atrial cardiac muscle cell to AV node cell signaling	6/898	21/21069	0.0001844	0.01764	0.01645	6	0.006682
GO:0086066	atrial cardiac muscle cell to AV node cell communication	6/898	21/21069	0.0001844	0.01764	0.01645	6	0.006682
GO:0035176	social behavior	10/898	60/21069	0.0002045	0.0192	0.0179	10	0.01114
GO:0006887	exocytosis	33/898	397/21069	0.0002113	0.01946	0.01815	33	0.03675
GO:0007034	vacuolar transport	19/898	180/21069	0.000257	0.02203	0.02054	19	0.02116
GO:0045953	negative regulation of natural killer cell mediated cytotoxicity	13/898	98/21069	0.0002642	0.02203	0.02054	13	0.01448
GO:0099175	regulation of postsynapse organization	13/898	98/21069	0.0002642	0.02203	0.02054	13	0.01448
GO:0002476	antigen processing and presentation of endogenous peptide antigen via MHC class Ib	7/898	31/21069	0.0002674	0.02203	0.02054	7	0.007795
GO:1905709	negative regulation of membrane permeability	7/898	31/21069	0.0002674	0.02203	0.02054	7	0.007795
GO:0051058	negative regulation of small GTPase mediated signal transduction	10/898	62/21069	0.0002701	0.02203	0.02054	10	0.01114
GO:0051703	biological process involved in intraspecies interaction between organisms	10/898	62/21069	0.0002701	0.02203	0.02054	10	0.01114
GO:0009812	flavonoid metabolic process	5/898	15/21069	0.0002922	0.02309	0.02153	5	0.005568
GO:0002716	negative regulation of natural killer cell mediated immunity	13/898	99/21069	0.0002925	0.02309	0.02153	13	0.01448
GO:0050954	sensory perception of mechanical stimulus	20/898	197/21069	0.0003009	0.02338	0.0218	20	0.02227
GO:0086012	membrane depolarization during cardiac muscle cell action potential	6/898	23/21069	0.0003189	0.0244	0.02275	6	0.006682
GO:0030101	natural killer cell activation	17/898	155/21069	0.00034	0.02544	0.02372	17	0.01893
GO:0006720	isoprenoid metabolic process	16/898	141/21069	0.0003427	0.02544	0.02372	16	0.01782
GO:0060042	retina morphogenesis in camera-type eye	11/898	76/21069	0.0003603	0.02634	0.02456	11	0.01225
GO:0099054	presynapse assembly	9/898	53/21069	0.0003654	0.02634	0.02456	9	0.01002
GO:0031589	cell-substrate adhesion	33/898	411/21069	0.0003947	0.02805	0.02615	33	0.03675
GO:0002428	antigen processing and presentation of peptide antigen via MHC class Ib	7/898	33/21069	0.0004034	0.02826	0.02635	7	0.007795
GO:0046580	negative regulation of Ras protein signal transduction	9/898	55/21069	0.0004859	0.03357	0.0313	9	0.01002
GO:0042391	regulation of membrane potential	36/898	468/21069	0.0004928	0.03358	0.03131	36	0.04009
GO:0001911	negative regulation of leukocyte mediated cytotoxicity	13/898	105/21069	0.0005223	0.03511	0.03274	13	0.01448
GO:0099172	presynapse organization	9/898	56/21069	0.0005574	0.0353	0.03292	9	0.01002
GO:0010727	negative regulation of hydrogen peroxide metabolic process	4/898	10/21069	0.0005601	0.0353	0.03292	4	0.004454
GO:0099612	protein localization to axon	4/898	10/21069	0.0005601	0.0353	0.03292	4	0.004454
GO:1900122	positive regulation of receptor binding	4/898	10/21069	0.0005601	0.0353	0.03292	4	0.004454
GO:0007158	neuron cell-cell adhesion	5/898	17/21069	0.0005607	0.0353	0.03292	5	0.005568
GO:0035637	multicellular organismal signaling	18/898	177/21069	0.000579	0.036	0.03357	18	0.02004
GO:0071320	cellular response to cAMP	9/898	57/21069	0.0006372	0.03886	0.03624	9	0.01002
GO:0045954	positive regulation of natural killer cell mediated cytotoxicity	8/898	46/21069	0.0006524	0.03886	0.03624	8	0.008909
GO:0099072	regulation of postsynaptic membrane neurotransmitter receptor levels	10/898	69/21069	0.0006533	0.03886	0.03624	10	0.01114
GO:1903532	positive regulation of secretion by cell	26/898	305/21069	0.0006563	0.03886	0.03624	26	0.02895
GO:0031342	negative regulation of cell killing	13/898	108/21069	0.0006854	0.04011	0.0374	13	0.01448
GO:0098742	cell-cell adhesion via plasma-membrane adhesion molecules	25/898	293/21069	0.0008149	0.04549	0.04242	25	0.02784
GO:0071709	membrane assembly	10/898	71/21069	0.0008218	0.04549	0.04242	10	0.01114
GO:0086010	membrane depolarization during action potential	7/898	37/21069	0.0008381	0.04549	0.04242	7	0.007795
GO:0051592	response to calcium ion	16/898	153/21069	0.0008476	0.04549	0.04242	16	0.01782
GO:0006198	cAMP catabolic process	4/898	11/21069	0.0008506	0.04549	0.04242	4	0.004454
GO:0015810	aspartate transmembrane transport	4/898	11/21069	0.0008506	0.04549	0.04242	4	0.004454
GO:0061669	spontaneous neurotransmitter secretion	4/898	11/21069	0.0008506	0.04549	0.04242	4	0.004454
GO:0072697	protein localization to cell cortex	4/898	11/21069	0.0008506	0.04549	0.04242	4	0.004454
GO:0120163	negative regulation of cold-induced thermogenesis	8/898	48/21069	0.0008753	0.04631	0.04319	8	0.008909
GO:0050808	synapse organization	36/898	484/21069	0.0009061	0.04744	0.04423	36	0.04009
GO:0002710	negative regulation of T cell mediated immunity	8/898	49/21069	0.001008	0.05167	0.04817	8	0.008909
GO:0050919	negative chemotaxis	8/898	49/21069	0.001008	0.05167	0.04817	8	0.008909
GO:0034308	primary alcohol metabolic process	14/898	127/21069	0.001048	0.05285	0.04928	14	0.01559
GO:0035249	synaptic transmission, glutamatergic	13/898	113/21069	0.001052	0.05285	0.04928	13	0.01448
GO:1901888	regulation of cell junction assembly	21/898	234/21069	0.001099	0.05468	0.05099	21	0.02339

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.1.0.3 Annotation group: CC (Cellular Component)

Barplot for enriched categories. Values on top have lower p values.

The category with lowest p value is neuron to neuron synapse (3.507641e-07), and the highest (among the lowest 10) is cation channel complex (0.0004858827). The ratio is 1385.212, i.e., they differ in 3 orders of magnitude.

Click to show/hide table with 100 rows for categories with the lowest p value.

ID	Description	GeneRatio	BgRatio	pvalue	p.adjust	qvalue	Count	GeneRatioCalc
GO:0098984	neuron to neuron synapse	45/940	383/22283	5.856e-10	3.508e-07	2.983e-07	45	0.04787
GO:0032279	asymmetric synapse	42/940	357/22283	2.113e-09	6.327e-07	5.381e-07	42	0.04468
GO:0014069	postsynaptic density	41/940	351/22283	4.053e-09	8.092e-07	6.883e-07	41	0.04362
GO:0099572	postsynaptic specialization	41/940	374/22283	2.523e-08	3.778e-06	3.214e-06	41	0.04362
GO:0032398	MHC class Ib protein complex	7/940	14/22283	6.152e-07	7.37e-05	6.268e-05	7	0.007447
GO:0098858	actin-based cell projection	29/940	253/22283	1.11e-06	9.888e-05	8.41e-05	29	0.03085
GO:0045211	postsynaptic membrane	32/940	296/22283	1.156e-06	9.888e-05	8.41e-05	32	0.03404
GO:0097060	synaptic membrane	39/940	408/22283	1.867e-06	0.0001398	0.0001189	39	0.04149
GO:0034702	ion channel complex	32/940	323/22283	7.405e-06	0.0004859	0.0004133	32	0.03404
GO:0034703	cation channel complex	26/940	236/22283	8.112e-06	0.0004859	0.0004133	26	0.02766
GO:0005938	cell cortex	32/940	326/22283	8.957e-06	0.0004878	0.0004149	32	0.03404
GO:0098978	glutamatergic synapse	33/940	354/22283	1.904e-05	0.0009504	0.0008083	33	0.03511
GO:0019897	extrinsic component of plasma membrane	21/940	180/22283	2.497e-05	0.001151	0.0009786	21	0.02234
GO:0019898	extrinsic component of membrane	31/940	335/22283	3.88e-05	0.00166	0.001412	31	0.03298
GO:0044304	main axon	12/940	74/22283	5.822e-05	0.002194	0.001866	12	0.01277
GO:0031252	cell leading edge	38/940	457/22283	5.861e-05	0.002194	0.001866	38	0.04043
GO:0032045	guanyl-nucleotide exchange factor complex	6/940	18/22283	6.653e-05	0.002344	0.001994	6	0.006383
GO:0098839	postsynaptic density membrane	14/940	100/22283	7.747e-05	0.002527	0.00215	14	0.01489
GO:1990351	transporter complex	37/940	447/22283	8.016e-05	0.002527	0.00215	37	0.03936
GO:0097731	9+0 non-motile cilium	17/940	140/22283	8.742e-05	0.002618	0.002227	17	0.01809
GO:0001750	photoreceptor outer segment	14/940	102/22283	9.643e-05	0.002751	0.002339	14	0.01489
GO:0042383	sarcolemma	17/940	147/22283	0.00016	0.004357	0.003705	17	0.01809
GO:0005891	voltage-gated calcium channel complex	9/940	49/22283	0.0001829	0.004762	0.004051	9	0.009574
GO:0097730	non-motile cilium	19/940	178/22283	0.0001961	0.004895	0.004163	19	0.02021
GO:1902495	transmembrane transporter complex	34/940	421/22283	0.0002438	0.005696	0.004844	34	0.03617
GO:0031256	leading edge membrane	20/940	196/22283	0.0002472	0.005696	0.004844	20	0.02128
GO:0030175	filopodium	15/940	128/22283	0.0003302	0.007064	0.006008	15	0.01596
GO:0099634	postsynaptic specialization membrane	15/940	128/22283	0.0003302	0.007064	0.006008	15	0.01596
GO:0034704	calcium channel complex	11/940	78/22283	0.0004161	0.008594	0.00731	11	0.0117
GO:0030863	cortical cytoskeleton	14/940	120/22283	0.0005394	0.01077	0.009161	14	0.01489
GO:0034705	potassium channel complex	12/940	94/22283	0.0005864	0.01133	0.009637	12	0.01277
GO:0120103	centriolar subdistal appendage	4/940	11/22283	0.0008185	0.01532	0.01303	4	0.004255
GO:0009898	cytoplasmic side of plasma membrane	18/940	187/22283	0.0009833	0.01785	0.01518	18	0.01915
GO:0097733	photoreceptor cell cilium	14/940	128/22283	0.001028	0.01811	0.0154	14	0.01489
GO:0016010	dystrophin-associated glycoprotein complex	5/940	20/22283	0.001207	0.02065	0.01756	5	0.005319
GO:0001726	ruffle	18/940	194/22283	0.001495	0.02487	0.02115	18	0.01915
GO:0099061	integral component of postsynaptic density membrane	8/940	53/22283	0.001599	0.02589	0.02202	8	0.008511
GO:0030864	cortical actin cytoskeleton	11/940	92/22283	0.001686	0.02621	0.02229	11	0.0117
GO:0032587	ruffle membrane	12/940	106/22283	0.001706	0.02621	0.02229	12	0.01277
GO:0009925	basal plasma membrane	23/940	279/22283	0.001783	0.0267	0.02271	23	0.02447
GO:0016342	catenin complex	6/940	32/22283	0.00196	0.02864	0.02436	6	0.006383
GO:0099146	intrinsic component of postsynaptic density membrane	8/940	56/22283	0.002293	0.03271	0.02782	8	0.008511
GO:0016323	basolateral plasma membrane	21/940	254/22283	0.002664	0.03711	0.03156	21	0.02234
GO:0008076	voltage-gated potassium channel complex	10/940	84/22283	0.002784	0.03745	0.03185	10	0.01064
GO:0098562	cytoplasmic side of membrane	19/940	222/22283	0.002835	0.03745	0.03185	19	0.02021
GO:0031307	integral component of mitochondrial outer membrane	5/940	24/22283	0.002876	0.03745	0.03185	5	0.005319
GO:0042612	MHC class I protein complex	7/940	46/22283	0.002954	0.03765	0.03203	7	0.007447
GO:0001917	photoreceptor inner segment	9/940	72/22283	0.003197	0.0399	0.03394	9	0.009574
GO:0031306	intrinsic component of mitochondrial outer membrane	5/940	25/22283	0.003472	0.04159	0.03538	5	0.005319
GO:0090665	glycoprotein complex	5/940	25/22283	0.003472	0.04159	0.03538	5	0.005319
GO:0043034	costamere	4/940	16/22283	0.003813	0.04421	0.0376	4	0.004255
GO:0099240	intrinsic component of synaptic membrane	16/940	179/22283	0.003859	0.04421	0.0376	16	0.01702
GO:0045178	basal part of cell	23/940	297/22283	0.003912	0.04421	0.0376	23	0.02447
GO:0043204	perikaryon	15/940	168/22283	0.005101	0.05659	0.04813	15	0.01596
GO:0031045	dense core granule	5/940	28/22283	0.005786	0.06189	0.05264	5	0.005319
GO:0031527	filopodium membrane	5/940	28/22283	0.005786	0.06189	0.05264	5	0.005319
GO:0099060	integral component of postsynaptic specialization membrane	9/940	80/22283	0.00647	0.06799	0.05783	9	0.009574
GO:0099568	cytoplasmic region	22/940	294/22283	0.006982	0.0721	0.06133	22	0.0234
GO:0030315	T-tubule	7/940	54/22283	0.007313	0.07425	0.06315	7	0.007447
GO:0031253	cell projection membrane	27/940	388/22283	0.007869	0.0768	0.06532	27	0.02872
GO:1905360	GTPase complex	6/940	42/22283	0.007944	0.0768	0.06532	6	0.006383
GO:0031514	motile cilium	20/940	262/22283	0.007954	0.0768	0.06532	20	0.02128
GO:0030658	transport vesicle membrane	24/940	334/22283	0.008115	0.0768	0.06532	24	0.02553
GO:0098948	intrinsic component of postsynaptic specialization membrane	9/940	83/22283	0.008205	0.0768	0.06532	9	0.009574
GO:0005930	axoneme	14/940	161/22283	0.008368	0.07712	0.06559	14	0.01489
GO:0097014	ciliary plasm	14/940	162/22283	0.008816	0.08001	0.06805	14	0.01489
GO:0005614	interstitial matrix	3/940	11/22283	0.009575	0.0856	0.07281	3	0.003191
GO:0032420	stereocilium	7/940	57/22283	0.009797	0.0863	0.0734	7	0.007447
GO:0045177	apical part of cell	31/940	474/22283	0.01092	0.09231	0.07851	31	0.03298
GO:0005902	microvillus	10/940	102/22283	0.01094	0.09231	0.07851	10	0.01064
GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	10/940	102/22283	0.01094	0.09231	0.07851	10	0.01064
GO:0150034	distal axon	21/940	290/22283	0.01171	0.09745	0.08289	21	0.02234
GO:0099699	integral component of synaptic membrane	14/940	168/22283	0.01191	0.0975	0.08293	14	0.01489
GO:0032838	plasma membrane bounded cell projection cytoplasm	19/940	255/22283	0.01211	0.0975	0.08293	19	0.02021
GO:0044224	juxtaparanode region of axon	3/940	12/22283	0.01237	0.0975	0.08293	3	0.003191
GO:1990454	L-type voltage-gated calcium channel complex	3/940	12/22283	0.01237	0.0975	0.08293	3	0.003191
GO:0016529	sarcoplasmic reticulum	8/940	74/22283	0.01256	0.09774	0.08313	8	0.008511
GO:0016528	sarcoplasm	9/940	90/22283	0.01361	0.1045	0.08891	9	0.009574
GO:0030027	lamellipodium	17/940	223/22283	0.01384	0.105	0.08928	17	0.01809
GO:0005770	late endosome	23/940	332/22283	0.01409	0.1055	0.08975	23	0.02447
GO:0035097	histone methyltransferase complex	8/940	76/22283	0.01461	0.1065	0.09054	8	0.008511
GO:0030673	axolemma	4/940	23/22283	0.01468	0.1065	0.09054	4	0.004255
GO:0030018	Z disc	12/940	139/22283	0.01475	0.1065	0.09054	12	0.01277
GO:0005834	heterotrimeric G-protein complex	5/940	35/22283	0.015	0.107	0.09101	5	0.005319
GO:0030426	growth cone	14/940	175/22283	0.01653	0.1165	0.09906	14	0.01489
GO:0043197	dendritic spine	15/940	194/22283	0.01778	0.1239	0.1053	15	0.01596
GO:0005912	adherens junction	15/940	195/22283	0.01854	0.1262	0.1073	15	0.01596
GO:0044309	neuron spine	15/940	195/22283	0.01854	0.1262	0.1073	15	0.01596
GO:1990531	phospholipid-translocating ATPase complex	3/940	14/22283	0.01922	0.1288	0.1095	3	0.003191
GO:0005771	multivesicular body	7/940	65/22283	0.01935	0.1288	0.1095	7	0.007447
GO:0032421	stereocilium bundle	7/940	66/22283	0.02088	0.1375	0.1169	7	0.007447
GO:0030427	site of polarized growth	14/940	181/22283	0.02147	0.1398	0.1189	14	0.01489
GO:0044753	amphisome	3/940	15/22283	0.02329	0.1495	0.1272	3	0.003191
GO:0016324	apical plasma membrane	26/940	406/22283	0.02346	0.1495	0.1272	26	0.02766
GO:0098685	Schaffer collateral - CA1 synapse	8/940	84/22283	0.02526	0.1591	0.1353	8	0.008511
GO:1902710	GABA receptor complex	4/940	27/22283	0.02549	0.1591	0.1353	4	0.004255
GO:0031674	I band	12/940	152/22283	0.02761	0.1664	0.1416	12	0.01277
GO:0097225	sperm midpiece	6/940	55/22283	0.02776	0.1664	0.1416	6	0.006383
GO:0000145	exocyst	3/940	16/22283	0.02778	0.1664	0.1416	3	0.003191
GO:0036128	CatSper complex	3/940	16/22283	0.02778	0.1664	0.1416	3	0.003191

[1] “”

These plots show connections among categories:

Enrichment map. Categories are connected by genes in common. Dot size indicates number of genes, dot color indicates adjusted p value.

Gene-concept network. Categories (brown dots) are linked by genes in common (gray dots). The size of category dots indicates gene count.

4.2 Disease Ontology

Here it is a barplot of most significantly enriched DO categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was ‘autism spectrum disorder’.

4.3 Network of Cancer Genes

Here it is a barplot of most significantly enriched NCG categories.

Barplot for enriched categories. Values on top have lower p values.

The most significant category was clear_cell_renal_cancer.